| Game Date |
Conference |
Road Team |
Score |
|
Home Team |
Score |
Box Score |
Recap |
Commentary |
| National Collegiate Baseball Writers Poll |
| 4/1/2006 | * | #1 Florida State | 3 | at | #6 North Carolina | 4 | Box Score | Recap | |
| 4/1/2006 | * | #2 Nebraska | 5 | at | Kansas State | 4 | Box Score | Recap | |
| 4/1/2006 | * | #3 Mississippi State | 4 | at | #26 Alabama | 5 | Box Score | Recap | Jim Wells' 500th victory at Alabama |
| 4/1/2006 | * | #4 Georgia Tech | 3 | at | Maryland | 6 | Box Score | Recap | |
| 4/1/2006 | * | #5 South Carolina | 18 | at | #17 Louisiana State | 4 | Box Score | Recap | |
| 4/1/2006 | * | #7 Rice | 3 | at | #14 Tulane | 2 | Box Score | Recap | |
| 4/1/2006 | * | Cal State Northridge | 1 | at | #8 Cal State Fullerton | 6 | Box Score | Recap | |
| 4/1/2006 | * | #9 Clemson | 6 | at | #19 Miami, Florida | 2 | Box Score | Recap | |
| 4/1/2006 | * | #22 Tennessee | 11 | at | #10 Arkansas | 6 | Box Score | Recap | |
| 4/1/2006 | * | #11 Arizona State | 2 | at | Washington State | 1 | Box Score | Recap | |
| 4/1/2006 |
| Texas-Pan American | 4 | at | #12 Oregon State | 5 | Box Score | Recap | resumption of suspended game (10 innings) |
| 4/1/2006 |
| Texas-Pan American | 1 | at | #12 Oregon State | 9 | Box Score | Recap | |
| 4/1/2006 |
| Texas-Pan American | 1 | at | #12 Oregon State | 14 | Box Score | Recap | |
| 4/1/2006 | * | #13 Texas | 9 | at | #15 Oklahoma | 4 | Box Score | Recap | |
| 4/1/2006 | * | #16 Wichita State | 0 | at | Creighton | 3 | Box Score | Recap | |
| 4/1/2006 | * | Vanderbilt | 4 | at | #18 Florida | 6 | Box Score | Recap | |
| 4/1/2006 | * | Memphis | 7 | at | #20 Southern Mississippi | 8 | Box Score | Recap | |
| 4/1/2006 | * | #23 Virginia | 9 | at | #21 North Carolina State | 10 | Box Score | Recap | |
| 4/1/2006 | * | Birmingham-Southern | 3 | at | #24 Winthrop | 4 | Box Score | Recap | |
| 4/1/2006 | * | Mississippi | 11 | at | #25 Georgia | 10 | Box Score | Recap | |
| 4/1/2006 | * | James Madison | 4 | at | #27 Old Dominion | 8 | Box Score | Recap | |
| 4/1/2006 | * | Elon | 2 | at | #28 College of Charleston | 3 | Box Score | Recap | |
| 4/1/2006 | * | #29 Baylor | 4 | at | Texas Tech | 14 | Box Score | Recap | |
| 4/1/2006 | * | #30 Kentucky | 1 | at | Auburn | 5 | Box Score | Recap | |
| America East Conference |
| 4/1/2006 |
| Binghamton | 8 | at | Central Connecticut State | 12 | Box Score | Recap | |
| 4/1/2006 |
| Binghamton | 10 | at | Central Connecticut State | 1 | Box Score | Recap | |
| 4/1/2006 |
| Maine | 26 | at | Maryland-Eastern Shore | 15 | Box Score | Recap | |
| 4/1/2006 |
| Maine | 11 | at | Maryland-Eastern Shore | 3 | Box Score | Recap | |
| 4/1/2006 |
| Maryland-Baltimore County | 9 | at | Longwood | 3 | Box Score | Recap | |
| 4/1/2006 |
| Maryland-Baltimore County | 9 | at | Longwood | 0 | Box Score | Recap | |
| 4/1/2006 |
| Stony Brook | 5 | at | New York Tech | 3 | Box Score | Recap | |
| 4/1/2006 |
| Vermont | 0 | at | Stetson | 8 | Box Score | Recap | |
| Atlantic 10 Conference |
| 4/1/2006 | * | Duquesne | 4 | at | St. Louis | 5 | Box Score | Recap | |
| 4/1/2006 | * | Duquesne | 1 | at | St. Louis | 11 | Box Score | Recap | moved from 4/2, impending weather |
| 4/1/2006 | * | Fordham | 8 | at | Xavier | 3 | Box Score | Recap | makeup of 3/31 game |
| 4/1/2006 | * | Fordham | 4 | at | Xavier | 1 | Box Score | Recap | |
| 4/1/2006 | * | Massachusetts | 11 | at | Richmond | 9 | Box Score | Recap | 10 innings |
| 4/1/2006 | * | Rhode Island | 9 | at | George Washington | 8 | Box Score | Recap | |
| 4/1/2006 | * | St. Bonaventure | 4 | at | Dayton | 5 | Box Score | Recap | |
| 4/1/2006 | * | St. Joseph's | 6 | at | LaSalle | 8 | Box Score | Recap | |
| 4/1/2006 | * | Temple | 2 | at | North Carolina-Charlotte | 11 | Box Score | Recap | |
| Atlantic Coast Conference |
| 4/1/2006 | * | #1 Florida State | 3 | at | #6 North Carolina | 4 | Box Score | Recap | |
| 4/1/2006 | * | #4 Georgia Tech | 3 | at | Maryland | 6 | Box Score | Recap | |
| 4/1/2006 | * | #9 Clemson | 6 | at | #19 Miami, Florida | 2 | Box Score | Recap | |
| 4/1/2006 | * | #23 Virginia | 9 | at | #21 North Carolina State | 10 | Box Score | Recap | |
| 4/1/2006 | * | Duke | 4 | at | Boston College | 15 | Box Score | Recap | Brockton, MA |
| 4/1/2006 | * | Virginia Tech | 3 | at | Wake Forest | 7 | Box Score | Recap | |
| Atlantic Sun Conference |
| 4/1/2006 | * | Belmont | 16 | at | East Tennessee State | 9 | Box Score | Recap | makeup of 3/31 game |
| 4/1/2006 | * | Belmont | 11 | at | East Tennessee State | 7 | Box Score | Recap | |
| 4/1/2006 | * | Campbell | 8 | at | Florida Atlantic | 11 | Box Score | Recap | |
| 4/1/2006 | * | Campbell | 7 | at | Florida Atlantic | 3 | Box Score | Recap | |
| 4/1/2006 | * | Gardner-Webb | 11 | at | Jacksonville | 10 | Box Score | Recap | |
| 4/1/2006 | * | Kennesaw State | 5 | at | Lipscomb | 3 | Box Score | Recap | |
| 4/1/2006 | * | Kennesaw State | 3 | at | Lipscomb | 2 | Box Score | Recap | |
| 4/1/2006 | * | North Florida | 8 | at | Mercer | 3 | Box Score | Recap | |
| 4/1/2006 | * | North Florida | 5 | at | Mercer | 3 | Box Score | Recap | |
| 4/1/2006 |
| Vermont | 0 | at | Stetson | 8 | Box Score | Recap | |
| Big 10 Conference |
| 4/1/2006 | * | Indiana | 1 | at | Michigan State | 2 | Box Score | Recap | |
| 4/1/2006 | * | Indiana | 12 | at | Michigan State | 7 | Box Score | Recap | |
| 4/1/2006 | * | Northwestern | 5 | at | Michigan | 0 | Box Score | Recap | |
| 4/1/2006 | * | Northwestern | 4 | at | Michigan | 2 | Box Score | Recap | |
| 4/1/2006 | * | Ohio State | 1 | at | Iowa | 7 | Box Score | Recap | |
| 4/1/2006 | * | Ohio State | 6 | at | Iowa | 4 | Box Score | Recap | |
| 4/1/2006 | * | Penn State | 12 | at | Minnesota | 2 | Box Score | Recap | |
| 4/1/2006 | * | Penn State | 0 | at | Minnesota | 5 | Box Score | Recap | |
| 4/1/2006 | * | Purdue | 2 | at | Illinois | 3 | Box Score | Recap | |
| 4/1/2006 | * | Purdue | 10 | at | Illinois | 4 | Box Score | Recap | |
| Big 12 Conference |
| 4/1/2006 | * | #2 Nebraska | 5 | at | Kansas State | 4 | Box Score | Recap | |
| 4/1/2006 | * | #13 Texas | 9 | at | #15 Oklahoma | 4 | Box Score | Recap | |
| 4/1/2006 | * | #29 Baylor | 4 | at | Texas Tech | 14 | Box Score | Recap | |
| 4/1/2006 | * | Missouri | 2 | at | Kansas | 3 | Box Score | Recap | |
| 4/1/2006 | * | Texas A&M | 3 | at | Oklahoma State | 4 | Box Score | Recap | |
| Big East Conference |
| 4/1/2006 | * | Connecticut | 2 | at | Louisville | 3 | Box Score | Recap | 12 innings |
| 4/1/2006 | * | Georgetown | 9 | at | St. John's | 15 | Box Score | Recap | |
| 4/1/2006 | * | Pittsburgh | 3 | at | Notre Dame | 4 | Box Score | Recap | |
| 4/1/2006 | * | South Florida | 4 | at | Cincinnati | 9 | Box Score | Recap | resumption of suspended game |
| 4/1/2006 | * | South Florida | 4 | at | Cincinnati | 7 | Box Score | Recap | |
| 4/1/2006 | * | Villanova | 8 | at | Rutgers | 6 | Box Score | Recap | |
| 4/1/2006 | * | West Virginia | 7 | at | Seton Hall | 5 | Box Score | Recap | resumption of suspended game |
| 4/1/2006 | * | West Virginia | 28 | at | Seton Hall | 8 | Box Score | Recap | |
| Big South Conference |
| 4/1/2006 | * | Birmingham-Southern | 3 | at | #24 Winthrop | 4 | Box Score | Recap | |
| 4/1/2006 | * | High Point | 4 | at | Charleston Southern | 8 | Box Score | Recap | |
| 4/1/2006 | * | High Point | 14 | at | Charleston Southern | 9 | | Recap | |
| 4/1/2006 | * | North Carolina-Asheville | 9 | at | Radford | 1 | Box Score | Recap | |
| 4/1/2006 | * | Virginia Military | 8 | at | Liberty | 16 | Box Score | Recap | |
| Big West Conference |
| 4/1/2006 | * | Cal State Northridge | 1 | at | #8 Cal State Fullerton | 6 | Box Score | Recap | |
| 4/1/2006 | * | Pacific | 11 | at | Cal Poly | 9 | Box Score | Recap | resumption of suspended game |
| 4/1/2006 | * | Pacific | 3 | at | Cal Poly | 6 | Box Score | Recap | |
| 4/1/2006 | * | UC Irvine | 2 | at | Long Beach State | 6 | Box Score | Recap | |
| 4/1/2006 |
| UC Davis | 7 | at | UC Riverside | 5 | Box Score | Recap | 10 innings |
| 4/1/2006 |
| UC Santa Barbara | 22 | at | Hawaii-Hilo | 6 | Box Score | Recap | |
| Colonial Athletic Association |
| 4/1/2006 | * | James Madison | 4 | at | #27 Old Dominion | 8 | Box Score | Recap | |
| 4/1/2006 | * | Delaware | 15 | at | Towson | 10 | Box Score | Recap | |
| 4/1/2006 | * | Georgia State | 2 | at | Virginia Commonwealth | 18 | Box Score | Recap | |
| 4/1/2006 | * | Hofstra | 9 | at | William and Mary | 1 | Box Score | Recap | |
| 4/1/2006 | * | North Carolina-Wilmington | 3 | at | Northeastern | 4 | Box Score | Recap | |
| Conference USA |
| 4/1/2006 | * | #7 Rice | 3 | at | #14 Tulane | 2 | Box Score | Recap | |
| 4/1/2006 | * | Memphis | 7 | at | #20 Southern Mississippi | 8 | Box Score | Recap | |
| 4/1/2006 | * | Houston | 13 | at | East Carolina | 4 | Box Score | Recap | |
| 4/1/2006 | * | UCF | 7 | at | Marshall | 5 | Box Score | Recap | Charleston, WV |
| 4/1/2006 |
| Alabama-Birmingham | 8 | at | Louisiana Tech | 11 | Box Score | Recap | |
| Division I Independents |
| 4/1/2006 |
| Texas-Pan American | 4 | at | #12 Oregon State | 5 | Box Score | Recap | resumption of suspended game (10 innings) |
| 4/1/2006 |
| Texas-Pan American | 1 | at | #12 Oregon State | 9 | Box Score | Recap | |
| 4/1/2006 |
| Texas-Pan American | 1 | at | #12 Oregon State | 14 | Box Score | Recap | |
| 4/1/2006 |
| Centenary | 9 | at | Texas A&M-Corpus Christi | 4 | Box Score | Recap | |
| 4/1/2006 |
| Centenary | 9 | at | Texas A&M-Corpus Christi | 11 | Box Score | Recap | |
| 4/1/2006 |
| Maryland-Baltimore County | 9 | at | Longwood | 3 | Box Score | Recap | |
| 4/1/2006 |
| Maryland-Baltimore County | 9 | at | Longwood | 0 | Box Score | Recap | |
| 4/1/2006 |
| North Dakota State | 1 | at | Northern Iowa | 3 | Box Score | Recap | makeup of 3/31 game |
| 4/1/2006 |
| North Dakota State | 0 | at | Northern Iowa | 4 | Box Score | Recap | |
| 4/1/2006 |
| Northwestern State | 5 | at | Dallas Baptist | 9 | Box Score | Recap | |
| 4/1/2006 |
| Savannah State | 0 | at | Albany State | 6 | | | |
| 4/1/2006 |
| Savannah State | 3 | at | Albany State | 4 | | | |
| 4/1/2006 |
| South Dakota State | 3 | at | Western Illinois | 7 | Box Score | Recap | |
| 4/1/2006 |
| South Dakota State | 6 | at | Western Illinois | 7 | Box Score | Recap | |
| 4/1/2006 |
| Southern Utah | 7 | at | Utah Valley State | 6 | Box Score | Recap | |
| 4/1/2006 |
| Southern Utah | 12 | at | Utah Valley State | 7 | Box Score | Recap | |
| 4/1/2006 |
| Stony Brook | 5 | at | New York Tech | 3 | Box Score | Recap | |
| 4/1/2006 |
| UC Santa Barbara | 22 | at | Hawaii-Hilo | 6 | Box Score | Recap | |
| Horizon League |
| 4/1/2006 | * | Cleveland State | 0 | at | Butler | 5 | Box Score | Recap | |
| 4/1/2006 | * | Cleveland State | 2 | at | Butler | 5 | Box Score | Recap | |
| 4/1/2006 | * | Wisconsin-Milwaukee | 11 | at | Wright State | 6 | Box Score | Recap | |
| 4/1/2006 | * | Wisconsin-Milwaukee | 1 | at | Wright State | 5 | Box Score | Recap | |
| 4/1/2006 | * | Youngstown State | 3 | at | Illinois-Chicago | 6 | Box Score | Recap | |
| 4/1/2006 | * | Youngstown State | 1 | at | Illinois-Chicago | 4 | Box Score | Recap | |
| Ivy League |
| 4/1/2006 | * | Brown | 9 | at | Pennsylvania | 6 | Box Score | Recap | |
| 4/1/2006 | * | Brown | 19 | at | Pennsylvania | 5 | Box Score | Recap | |
| 4/1/2006 | * | Dartmouth | 1 | at | Cornell | 2 | Box Score | Recap | |
| 4/1/2006 | * | Dartmouth | 16 | at | Cornell | 6 | Box Score | Recap | |
| 4/1/2006 | * | Harvard | 4 | at | Princeton | 1 | Box Score | Recap | |
| 4/1/2006 | * | Harvard | 8 | at | Princeton | 2 | Box Score | Recap | |
| 4/1/2006 | * | Yale | 6 | at | Columbia | 4 | Box Score | Recap | |
| 4/1/2006 | * | Yale | 7 | at | Columbia | 9 | Box Score | Recap | |
| Metro Atlantic Athletic Conference |
| 4/1/2006 | * | Canisius | 5 | at | Marist | 11 | Box Score | Recap | |
| 4/1/2006 | * | Fairfield | 15 | at | St. Peter's | 16 | Box Score | Recap | |
| 4/1/2006 | * | Fairfield | 8 | at | St. Peter's | 6 | Box Score | Recap | 5 innings (darkness) |
| 4/1/2006 | * | LeMoyne | 22 | at | Iona | 6 | Box Score | Recap | |
| 4/1/2006 | * | LeMoyne | 9 | at | Iona | 5 | Box Score | Recap | |
| 4/1/2006 | * | Niagara | 4 | at | Manhattan | 5 | Box Score | Recap | |
| 4/1/2006 | * | Niagara | 5 | at | Manhattan | 3 | Box Score | Recap | |
| 4/1/2006 | * | Siena | 4 | at | Rider | 8 | Box Score | Recap | |
| 4/1/2006 | * | Siena | 2 | at | Rider | 1 | Box Score | Recap | |
| Mid American Conference |
| 4/1/2006 | * | Akron | 6 | at | Northern Illinois | 5 | Box Score | Recap | |
| 4/1/2006 | * | Buffalo | 1 | at | Eastern Michigan | 6 | Box Score | Recap | |
| 4/1/2006 | * | Central Michigan | 5 | at | Kent State | 14 | Box Score | Recap | |
| 4/1/2006 | * | Miami, Ohio | 0 | at | Ball State | 5 | Box Score | Recap | |
| 4/1/2006 | * | Ohio | 2 | at | Toledo | 9 | Box Score | Recap | |
| 4/1/2006 | * | Western Michigan | 5 | at | Bowling Green State | 6 | Box Score | Recap | |
| Mid Continent Conference |
| 4/1/2006 |
| Bethune-Cookman | 1 | at | Oral Roberts | 6 | Box Score | Recap | |
| 4/1/2006 |
| Centenary | 9 | at | Texas A&M-Corpus Christi | 4 | Box Score | Recap | |
| 4/1/2006 |
| Centenary | 9 | at | Texas A&M-Corpus Christi | 11 | Box Score | Recap | |
| 4/1/2006 |
| Illinois Tech | 3 | at | Valparaiso | 4 | Box Score | Recap | |
| 4/1/2006 |
| Rochester (MI) | 7 | at | Oakland | 1 | Box Score | Recap | |
| 4/1/2006 |
| Rochester (MI) | 0 | at | Oakland | 11 | Box Score | Recap | |
| 4/1/2006 |
| South Dakota State | 3 | at | Western Illinois | 7 | Box Score | Recap | |
| 4/1/2006 |
| South Dakota State | 6 | at | Western Illinois | 7 | Box Score | Recap | |
| 4/1/2006 |
| Southern Utah | 7 | at | Utah Valley State | 6 | Box Score | Recap | |
| 4/1/2006 |
| Southern Utah | 12 | at | Utah Valley State | 7 | Box Score | Recap | |
| Mid-Eastern Athletic Conference |
| 4/1/2006 | * | Coppin State | 1 | at | Norfolk State | 8 | Box Score | Recap | |
| 4/1/2006 | * | Coppin State | 7 | at | Norfolk State | 6 | Box Score | Recap | 11 innings |
| 4/1/2006 | * | Florida A&M | 6 | at | North Carolina A&T | 15 | Box Score | Recap | |
| 4/1/2006 | * | Florida A&M | 17 | at | North Carolina A&T | 11 | Box Score | Recap | |
| 4/1/2006 |
| Bethune-Cookman | 1 | at | Oral Roberts | 6 | Box Score | Recap | |
| 4/1/2006 |
| Maine | 26 | at | Maryland-Eastern Shore | 15 | Box Score | Recap | |
| 4/1/2006 |
| Maine | 11 | at | Maryland-Eastern Shore | 3 | Box Score | Recap | |
| Missouri Valley Conference |
| 4/1/2006 | * | #16 Wichita State | 0 | at | Creighton | 3 | Box Score | Recap | |
| 4/1/2006 | * | Bradley | 5 | at | Southern Illinois | 10 | Box Score | Recap | |
| 4/1/2006 | * | Evansville | 3 | at | Missouri State | 4 | Box Score | Recap | |
| 4/1/2006 | * | Illinois State | 1 | at | Indiana State | 9 | Box Score | Recap | |
| 4/1/2006 |
| North Dakota State | 1 | at | Northern Iowa | 3 | Box Score | Recap | makeup of 3/31 game |
| 4/1/2006 |
| North Dakota State | 0 | at | Northern Iowa | 4 | Box Score | Recap | |
| Mountain West Conference |
| 4/1/2006 | * | Air Force | 7 | vs | Nevada-Las Vegas | 9 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 4/1/2006 | * | Brigham Young | 3 | vs | Utah | 6 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 4/1/2006 | * | Texas Christian | 7 | at | San Diego State | 9 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| Northeast Conference |
| 4/1/2006 | * | Monmouth | 14 | at | Long Island | 0 | Box Score | Recap | |
| 4/1/2006 | * | Monmouth | 8 | at | Long Island | 1 | Box Score | Recap | |
| 4/1/2006 | * | Mount St. Mary's | 2 | at | Quinnipiac | 9 | Box Score | Recap | |
| 4/1/2006 | * | Sacred Heart | 4 | at | St. Francis | 3 | | Recap | |
| 4/1/2006 | * | Sacred Heart | 2 | at | St. Francis | 1 | | Recap | |
| 4/1/2006 | * | Wagner | 2 | at | Fairleigh Dickinson | 1 | Box Score | Recap | |
| 4/1/2006 | * | Wagner | 11 | at | Fairleigh Dickinson | 1 | Box Score | Recap | |
| 4/1/2006 |
| Binghamton | 8 | at | Central Connecticut State | 12 | Box Score | Recap | |
| 4/1/2006 |
| Binghamton | 10 | at | Central Connecticut State | 1 | Box Score | Recap | |
| Ohio Valley Conference |
| 4/1/2006 | * | Morehead State | 2 | at | Austin Peay State | 4 | Box Score | | |
| 4/1/2006 | * | Morehead State | 1 | at | Austin Peay State | 4 | Box Score | | |
| 4/1/2006 | * | Murray State | 0 | at | Southeast Missouri State | 1 | Box Score | Recap | |
| 4/1/2006 | * | Murray State | 0 | at | Southeast Missouri State | 5 | Box Score | Recap | |
| 4/1/2006 | * | Samford | 11 | at | Jacksonville State | 5 | Box Score | Recap | |
| 4/1/2006 | * | Samford | 7 | at | Jacksonville State | 3 | Box Score | Recap | |
| 4/1/2006 | * | Tennessee Tech | 4 | at | Eastern Kentucky | 22 | Box Score | Recap | |
| 4/1/2006 | * | Tennessee Tech | 0 | at | Eastern Kentucky | 5 | Box Score | Recap | |
| 4/1/2006 | * | Tennessee-Martin | 1 | at | Eastern Illinois | 6 | Box Score | Recap | |
| 4/1/2006 | * | Tennessee-Martin | 4 | at | Eastern Illinois | 5 | Box Score | Recap | |
| Pac 10 Conference |
| 4/1/2006 | * | #11 Arizona State | 2 | at | Washington State | 1 | Box Score | Recap | |
| 4/1/2006 |
| Texas-Pan American | 4 | at | #12 Oregon State | 5 | Box Score | Recap | resumption of suspended game (10 innings) |
| 4/1/2006 |
| Texas-Pan American | 1 | at | #12 Oregon State | 9 | Box Score | Recap | |
| 4/1/2006 |
| Texas-Pan American | 1 | at | #12 Oregon State | 14 | Box Score | Recap | |
| 4/1/2006 | * | Arizona | 5 | at | California | 1 | Box Score | Recap | makeup of 3/31 game |
| 4/1/2006 | * | Arizona |
| at | California |
| | Recap | suspended to 4/2, darkness (Tied 4-4, Top 13) |
| 4/1/2006 | * | Southern California | 7 | at | Stanford | 9 | Box Score | Recap | makeup of 3/31 game |
| 4/1/2006 | * | Southern California | 3 | at | Stanford | 2 | Box Score | Recap | 12 innings |
| 4/1/2006 | * | UCLA | 3 | at | Washington | 2 | Box Score | Recap | 11 innings |
| Patriot League |
| 4/1/2006 | * | Holy Cross | 1 | at | Navy | 10 | Box Score | Recap | |
| 4/1/2006 | * | Holy Cross | 2 | at | Navy | 4 | Box Score | Recap | |
| 4/1/2006 | * | Lafayette | 16 | at | Army | 5 | Box Score | Recap | |
| 4/1/2006 | * | Lafayette | 11 | at | Army | 2 | Box Score | Recap | |
| 4/1/2006 | * | Lehigh | 6 | at | Bucknell | 3 | Box Score | Recap | |
| 4/1/2006 | * | Lehigh | 10 | at | Bucknell | 5 | Box Score | Recap | |
| Southeastern Conference |
| 4/1/2006 | * | #3 Mississippi State | 4 | at | #26 Alabama | 5 | Box Score | Recap | Jim Wells' 500th victory at Alabama |
| 4/1/2006 | * | #5 South Carolina | 18 | at | #17 Louisiana State | 4 | Box Score | Recap | |
| 4/1/2006 | * | #22 Tennessee | 11 | at | #10 Arkansas | 6 | Box Score | Recap | |
| 4/1/2006 | * | Vanderbilt | 4 | at | #18 Florida | 6 | Box Score | Recap | |
| 4/1/2006 | * | Mississippi | 11 | at | #25 Georgia | 10 | Box Score | Recap | |
| 4/1/2006 | * | #30 Kentucky | 1 | at | Auburn | 5 | Box Score | Recap | |
| Southern Conference |
| 4/1/2006 | * | Elon | 2 | at | #28 College of Charleston | 3 | Box Score | Recap | |
| 4/1/2006 | * | Georgia Southern | 13 | at | Davidson | 11 | Box Score | Recap | |
| 4/1/2006 | * | North Carolina-Greensboro | 3 | at | The Citadel | 2 | Box Score | Recap | |
| 4/1/2006 | * | Western Carolina | 3 | at | Appalachian State | 4 | Box Score | Recap | |
| 4/1/2006 | * | Wofford | 4 | at | Furman | 17 | Box Score | Recap | |
| Southland Conference |
| 4/1/2006 | * | Lamar | 8 | at | Nicholls State | 6 | Box Score | Recap | |
| 4/1/2006 | * | Louisiana-Monroe | 11 | at | Texas State | 7 | Box Score | Recap | |
| 4/1/2006 | * | McNeese State | 3 | at | Texas-San Antonio | 4 | Box Score | Recap | resumption of suspended game (12 innings) |
| 4/1/2006 | * | McNeese State | 7 | at | Texas-San Antonio | 8 | Box Score | Recap | 12 innings |
| 4/1/2006 | * | Southeastern Louisiana | 7 | at | Sam Houston State | 4 | Box Score | Recap | |
| 4/1/2006 | * | Texas-Arlington | 2 | at | Stephen F. Austin | 0 | Box Score | Recap | |
| 4/1/2006 |
| Northwestern State | 5 | at | Dallas Baptist | 9 | Box Score | Recap | |
| Southwestern Athletic Conference |
| 4/1/2006 | * | Alabama State | 5 | at | Alcorn State | 3 | Box Score | Recap | |
| 4/1/2006 | * | Alabama State | 5 | at | Alcorn State | 8 | Box Score | Recap | |
| 4/1/2006 | * | Grambling State | 3 | at | Arkansas-Pine Bluff | 4 | | Recap | |
| 4/1/2006 | * | Grambling State | 3 | at | Arkansas-Pine Bluff | 4 | | Recap | |
| 4/1/2006 | * | Mississippi Valley State | 7 | at | Alabama A&M | 1 | Box Score | Recap | |
| 4/1/2006 | * | Mississippi Valley State | 6 | at | Alabama A&M | 3 | Box Score | Recap | |
| 4/1/2006 | * | Texas Southern | 14 | at | Prairie View A&M | 9 | Box Score | Recap | |
| 4/1/2006 |
| Jackson State | 3 | at | Southern | 16 | Box Score | | |
| Sun Belt Conference |
| 4/1/2006 | * | Arkansas State | 4 | at | Louisiana-Lafayette | 8 | Box Score | Recap | |
| 4/1/2006 | * | New Orleans | 4 | at | Florida International | |