| Game Date | Conference | Road Team | Score |
| Home Team | Score | Status | Box Score | Recap | Commentary |
|---|
| National Collegiate Baseball Writers Poll |
|---|
| 5/3/2006 |
| #12 South Carolina | 8 | at | Wofford | 9 | FINAL | Box Score | Recap | 13 innings |
| 5/3/2006 |
| Jacksonville | 2 | at | #13 Florida State | 9 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| The Citadel | 2 | at | #25 Winthrop | 8 | FINAL | Box Score | Recap |
|
| America East Conference |
|---|
| 5/3/2006 |
| Binghamton | 9 | at | Siena | 4 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Brown |
| at | Maine |
| Cancelled |
| Recap | CCD, rain (Sanford, ME) |
| 5/3/2006 |
| Brown |
| at | Maine |
| Cancelled |
| Recap | CCD, rain (Sanford, ME) |
| 5/3/2006 |
| Delaware | 6 | at | Maryland-Baltimore County | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Vermont |
| at | Massachusetts |
| Cancelled |
| Recap | CCD, inclement weather |
| Atlantic 10 Conference |
|---|
| 5/3/2006 |
| Akron | 6 | at | Duquesne | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Canisius | 5 | at | St. Bonaventure | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| George Washington | 3 | at | Maryland | 12 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Manhattan | 6 | at | Fordham | 8 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Vermont |
| at | Massachusetts |
| Cancelled |
| Recap | CCD, inclement weather |
| 5/3/2006 |
| Villanova | 13 | at | Temple | 3 | FINAL | Box Score | Recap |
|
| Atlantic Coast Conference |
|---|
| 5/3/2006 |
| Jacksonville | 2 | at | #13 Florida State | 9 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Boston College |
| at | Dartmouth |
| Postponed |
| Recap | PPD to 5/4, inclement weather |
| 5/3/2006 |
| George Washington | 3 | at | Maryland | 12 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Liberty | 3 | at | Virginia Tech | 8 | FINAL | Box Score | Recap |
|
| Atlantic Sun Conference |
|---|
| 5/3/2006 |
| Jacksonville | 2 | at | #13 Florida State | 9 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Belmont | 15 | at | Western Kentucky | 7 | FINAL | Box Score | Recap |
|
| Big 10 Conference |
|---|
| 5/3/2006 |
| Eastern Michigan | 2 | at | Ohio State | 5 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Minnesota | 3 | at | North Dakota State | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Northern Illinois | 8 | vs | Northwestern | 6 | FINAL | Box Score | Recap | Geneva, IL |
| 5/3/2006 |
| Western Michigan | 5 | at | Michigan | 10 | FINAL | Box Score | Recap |
|
| Big 12 Conference |
|---|
| 5/3/2006 |
| Missouri |
| at | Illinois State |
| Cancelled |
| Recap | CCD, inclement weather (makeup of 3/22 game) |
| Big East Conference |
|---|
| 5/3/2006 |
| Fairleigh Dickinson | 3 | at | Rutgers | 9 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Fairleigh Dickinson | 7 | at | Rutgers | 5 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Morehead State | 11 | at | Cincinnati | 12 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Morehead State | 1 | at | Cincinnati | 4 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Murray State | 1 | at | Louisville | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Pittsburgh | 11 | at | Cleveland State | 8 | FINAL | Box Score | Recap | makeup of 3/21 game |
| 5/3/2006 |
| Villanova | 13 | at | Temple | 3 | FINAL | Box Score | Recap |
|
| Big South Conference |
|---|
| 5/3/2006 |
| The Citadel | 2 | at | #25 Winthrop | 8 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Furman | 8 | at | Charleston Southern | 6 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Liberty | 3 | at | Virginia Tech | 8 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Samford | 4 | at | Birmingham-Southern | 8 | FINAL | Box Score | Recap | makeup of 4/19 game |
| Colonial Athletic Association |
|---|
| 5/3/2006 |
| Delaware | 6 | at | Maryland-Baltimore County | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| George Mason |
| at | Coppin State |
| Cancelled |
| Recap | CCD, scheduling conflict |
| 5/3/2006 |
| Harvard | 7 | at | Northeastern | 5 | FINAL | Box Score | Recap | makeup of 5/2 game |
| 5/3/2006 |
| Iona | 5 | at | Hofstra | 13 | FINAL | Box Score | Recap |
|
| Conference USA |
|---|
| 5/3/2006 |
| Marshall | 14 | at | Eastern Kentucky | 12 | FINAL | Box Score | Recap |
|
| Division I Independents |
|---|
| 5/3/2006 |
| Minnesota | 3 | at | North Dakota State | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| New York Tech | 4 | at | Lafayette | 13 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Texas-Pan American | 5 | at | Texas Southern | 2 | FINAL | Box Score | Recap |
|
| Horizon League |
|---|
| 5/3/2006 |
| Kent State | 2 | at | Youngstown State | 3 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Pittsburgh | 11 | at | Cleveland State | 8 | FINAL | Box Score | Recap | makeup of 3/21 game |
| Ivy League |
|---|
| 5/3/2006 |
| Boston College |
| at | Dartmouth |
| Postponed |
| Recap | PPD to 5/4, inclement weather |
| 5/3/2006 |
| Brown |
| at | Maine |
| Cancelled |
| Recap | CCD, rain (Sanford, ME) |
| 5/3/2006 |
| Brown |
| at | Maine |
| Cancelled |
| Recap | CCD, rain (Sanford, ME) |
| 5/3/2006 |
| Harvard | 7 | at | Northeastern | 5 | FINAL | Box Score | Recap | makeup of 5/2 game |
| 5/3/2006 |
| Princeton | 5 | at | Rider | 9 | FINAL | Box Score | Recap |
|
| Metro Atlantic Athletic Conference |
|---|
| 5/3/2006 |
| Binghamton | 9 | at | Siena | 4 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Buffalo | 3 | at | LeMoyne | 5 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Buffalo | 6 | at | LeMoyne | 3 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Canisius | 5 | at | St. Bonaventure | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Iona | 5 | at | Hofstra | 13 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Manhattan | 6 | at | Fordham | 8 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Princeton | 5 | at | Rider | 9 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| St. Peter's | 0 | at | Army | 8 | FINAL | Box Score | Recap |
|
| Mid American Conference |
|---|
| 5/3/2006 |
| Akron | 6 | at | Duquesne | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Buffalo | 3 | at | LeMoyne | 5 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Buffalo | 6 | at | LeMoyne | 3 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Eastern Michigan | 2 | at | Ohio State | 5 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Kent State | 2 | at | Youngstown State | 3 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Northern Illinois | 8 | vs | Northwestern | 6 | FINAL | Box Score | Recap | Geneva, IL |
| 5/3/2006 |
| Western Michigan | 5 | at | Michigan | 10 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Wilmington (Ohio) | 1 | at | Ohio | 12 | FINAL | Box Score | Recap |
|
| Mid Continent Conference |
|---|
| 5/3/2006 |
| Wisconsin-Platteville | 2 | at | Western Illinois | 1 | FINAL | Box Score | Recap |
|
| Mid-Eastern Athletic Conference |
|---|
| 5/3/2006 |
| George Mason |
| at | Coppin State |
| Cancelled |
| Recap | CCD, scheduling conflict |
| Missouri Valley Conference |
|---|
| 5/3/2006 |
| Missouri |
| at | Illinois State |
| Cancelled |
| Recap | CCD, inclement weather (makeup of 3/22 game) |
| Northeast Conference |
|---|
| 5/3/2006 |
| Fairleigh Dickinson | 3 | at | Rutgers | 9 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Fairleigh Dickinson | 7 | at | Rutgers | 5 | FINAL | Box Score | Recap |
|
| Ohio Valley Conference |
|---|
| 5/3/2006 |
| Arkansas State |
| at | Southeast Missouri State |
| Cancelled |
| Recap | CCD, rain |
| 5/3/2006 |
| Marshall | 14 | at | Eastern Kentucky | 12 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Morehead State | 11 | at | Cincinnati | 12 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Morehead State | 1 | at | Cincinnati | 4 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Murray State | 1 | at | Louisville | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Samford | 4 | at | Birmingham-Southern | 8 | FINAL | Box Score | Recap | makeup of 4/19 game |
| Patriot League |
|---|
| 5/3/2006 |
| New York Tech | 4 | at | Lafayette | 13 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| St. Peter's | 0 | at | Army | 8 | FINAL | Box Score | Recap |
|
| Southeastern Conference |
|---|
| 5/3/2006 |
| #12 South Carolina | 8 | at | Wofford | 9 | FINAL | Box Score | Recap | 13 innings |
| Southern Conference |
|---|
| 5/3/2006 |
| #12 South Carolina | 8 | at | Wofford | 9 | FINAL | Box Score | Recap | 13 innings |
| 5/3/2006 |
| The Citadel | 2 | at | #25 Winthrop | 8 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Furman | 8 | at | Charleston Southern | 6 | FINAL | Box Score | Recap |
|
| Southland Conference |
|---|
| 5/3/2006 |
| Louisiana-Lafayette | 2 | at | Northwestern State | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Southern | 1 | at | Southeastern Louisiana | 0 | FINAL | Box Score | Recap | makeup of 2/25 game |
| Southwestern Athletic Conference |
|---|
| 5/3/2006 |
| Southern | 1 | at | Southeastern Louisiana | 0 | FINAL | Box Score | Recap | makeup of 2/25 game |
| 5/3/2006 |
| Texas-Pan American | 5 | at | Texas Southern | 2 | FINAL | Box Score | Recap |
|
| Sun Belt Conference |
|---|
| 5/3/2006 |
| Arkansas State |
| at | Southeast Missouri State |
| Cancelled |
| Recap | CCD, rain |
| 5/3/2006 |
| Belmont | 15 | at | Western Kentucky | 7 | FINAL | Box Score | Recap |
|
| 5/3/2006 |
| Louisiana-Lafayette | 2 | at | Northwestern State | 7 | FINAL | Box Score | Recap |
|