| Game Date | Conference | Road Team | Score |
| Home Team | Score | Box Score | Recap | Commentary |
| 2/1/2006 |
| Jacksonville | 18 | at | Florida A&M | 1 | Box Score | Recap |
|
| 2/3/2006 |
| Eastern Michigan | 9 | at | East Tennessee State | 6 | Box Score | Recap | 13 innings |
| 2/3/2006 |
| Eastern Michigan | 7 | at | East Tennessee State | 8 | Box Score | Recap |
|
| 2/3/2006 |
| Florida A&M | 2 | at | Mercer | 8 | Box Score | Recap |
|
| 2/3/2006 |
| Tennessee | 12 | at | Florida Atlantic | 1 | Box Score | Recap |
|
| 2/4/2006 |
| Eastern Michigan |
| at | East Tennessee State |
| | Recap | CCD, rain |
| 2/4/2006 |
| Florida A&M | 2 | at | Mercer | 10 | Box Score | Recap |
|
| 2/4/2006 |
| North Florida | 7 | at | Georgia Southern | 2 | Box Score | Recap |
|
| 2/4/2006 |
| Tennessee |
| at | Florida Atlantic |
| | Recap | PPD to 2/5, rain |
| 2/5/2006 |
| Florida A&M | 7 | at | Mercer | 4 | Box Score | Recap |
|
| 2/5/2006 |
| North Florida | 3 | at | Georgia Southern | 11 | Box Score | Recap |
|
| 2/5/2006 |
| Tennessee | 9 | at | Florida Atlantic | 8 | Box Score | Recap | makeup of 2/4 game |
| 2/5/2006 |
| Tennessee | 5 | at | Florida Atlantic | 6 | Box Score | Recap |
|
| 2/7/2006 |
| Georgia Southern | 5 | at | Jacksonville | 10 | Box Score | Recap |
|
| 2/9/2006 |
| East Tennessee State | 3 | vs | Missouri | 2 | Box Score | Recap | Buccaneer Baseball Classic, Charleston, SC |
| 2/10/2006 |
| Bethune-Cookman | 4 | at | Jacksonville | 3 | Box Score | Recap |
|
| 2/10/2006 |
| Campbell | 0 | at | Coastal Carolina | 9 | Box Score | Recap | Springmaid Beach Resort Tournament, Conway, SC |
| 2/10/2006 |
| Delaware State | 3 | at | Gardner-Webb | 4 | Box Score | Recap |
|
| 2/10/2006 |
| Delaware State |
| at | Gardner-Webb |
| | Recap | moved from 2/11, impending weather (suspended to 2/12, darkness -- GWU 4-3, Top 6) |
| 2/10/2006 |
| Kennesaw State | 8 | vs | Washington State | 5 | Box Score | Recap | Buccaneer Baseball Classic, Charleston, SC |
| 2/10/2006 |
| North Florida |
| at | Louisiana State |
| | Recap | suspended to 2/11, rain (7-0 LSU, Bottom 4) |
| 2/10/2006 |
| Southeastern Louisiana | 1 | at | Stetson | 2 | Box Score | Recap |
|
| 2/10/2006 |
| Southern Illinois | 7 | at | Florida Atlantic | 6 | Box Score | Recap | SIU rallies from 6-0 deficit after 7 |
| 2/10/2006 |
| Virginia Military | 5 | at | Mercer | 11 | Box Score | Recap |
|
| 2/10/2006 |
| Washington State | 8 | vs | East Tennessee State | 2 | Box Score | Recap | Buccaneer Baseball Classic, Charleston, SC |
| 2/11/2006 |
| Campbell |
| vs | The Citadel |
| | Recap | CCD, rain (Springmaid Beach Resort Tournament, Conway, SC) |
| 2/11/2006 |
| East Tennessee State |
| at | Charleston Southern |
| | Recap | CCD, rain (Buccaneer Baseball Classic, Charleston, SC) |
| 2/11/2006 |
| Jacksonville | 10 | at | Bethune-Cookman | 1 | Box Score | Recap |
|
| 2/11/2006 |
| Kennesaw State | 3 | vs | Missouri | 5 | Box Score | Recap | Buccaneer Baseball Classic, Charleston, SC |
| 2/11/2006 |
| North Florida | 1 | at | Louisiana State | 11 | Box Score | Recap | resumption of suspended game |
| 2/11/2006 |
| North Florida | 0 | at | Louisiana State | 4 | Box Score | Recap |
|
| 2/11/2006 |
| Southeastern Louisiana | 5 | at | Stetson | 4 | Box Score | Recap |
|
| 2/11/2006 |
| Southern Illinois | 0 | at | Florida Atlantic | 12 | Box Score | Recap |
|
| 2/11/2006 |
| Virginia Military | 4 | at | Mercer | 9 | Box Score | Recap |
|
| 2/12/2006 |
| Bethune-Cookman | 2 | at | Jacksonville | 8 | Box Score | Recap |
|
| 2/12/2006 |
| Delaware State | 3 | at | Gardner-Webb | 9 | Box Score | Recap | resumption of suspended game |
| 2/12/2006 |
| Delaware State | 7 | at | Gardner-Webb | 9 | Box Score | Recap |
|
| 2/12/2006 |
| North Florida | 4 | at | Louisiana State | 3 | Box Score | Recap | 10 innings |
| 2/12/2006 |
| Southeastern Louisiana | 6 | at | Stetson | 4 | Box Score | Recap |
|
| 2/12/2006 |
| Southern Illinois | 17 | at | Florida Atlantic | 8 | Box Score | Recap |
|
| 2/12/2006 |
| Virginia Military | 5 | at | Mercer | 4 | Box Score | Recap |
|
| 2/14/2006 |
| Campbell | 10 | at | Charleston Southern | 14 | Box Score | Recap |
|
| 2/14/2006 |
| Evansville | 6 | at | Lipscomb | 3 | Box Score | Recap |
|
| 2/14/2006 |
| Jacksonville | 4 | at | South Florida | 3 | Box Score | Recap |
|
| 2/14/2006 |
| Stetson | 2 | at | Bethune-Cookman | 3 | Box Score | Recap |
|
| 2/15/2006 |
| Mercer | 3 | at | Florida | 2 | Box Score | Recap |
|
| 2/16/2006 |
| Xavier | 7 | at | East Tennessee State | 10 | Box Score | Recap | moved from 2/18, impending weather |
| 2/16/2006 |
| Xavier | 10 | at | East Tennessee State | 5 | Box Score | Recap | moved from 2/19, impending weather |
| 2/17/2006 |
| Bethune-Cookman | 2 | at | Mercer | 4 | Box Score | Recap |
|
| 2/17/2006 |
| Chicago State | 2 | at | Lipscomb | 8 | Box Score | Recap |
|
| 2/17/2006 |
| Chicago State | 16 | at | Lipscomb | 14 | Box Score | Recap |
|
| 2/17/2006 |
| Kennesaw State | 2 | at | Georgia Tech | 3 | Box Score | Recap |
|
| 2/17/2006 |
| Louisville | 4 | at | Florida Atlantic | 13 | Box Score | Recap |
|
| 2/17/2006 |
| Marshall | 3 | at | Belmont | 7 | Box Score | Recap |
|
| 2/17/2006 |
| Marshall | 7 | at | Belmont | 5 | Box Score | Recap |
|
| 2/17/2006 |
| Maryland | 0 | vs | Gardner-Webb | 3 | Box Score | Recap | Griffin Pontiac Challenge, Rock Hill, SC |
| 2/17/2006 |
| North Florida | 1 | at | UCF | 0 | Box Score | Recap | 10 innings |
| 2/17/2006 |
| Stetson | 5 | at | South Alabama | 3 | Box Score | Recap | Coca-Cola Classic, Mobile, AL |
| 2/17/2006 |
| Virginia Tech | 5 | at | Campbell | 2 | Box Score | Recap |
|
| 2/17/2006 |
| Xavier | 4 | at | East Tennessee State | 9 | Box Score | Recap |
|
| 2/18/2006 |
| Bethune-Cookman | 5 | at | Mercer | 12 | Box Score | Recap |
|
| 2/18/2006 |
| Chicago State |
| at | Lipscomb |
| | Recap | PPD to 2/19, inclement weather |
| 2/18/2006 |
| Gardner-Webb | 7 | vs | Evansville | 3 | Box Score | Recap | Griffin Pontiac Challenge, Rock Hill, SC |
| 2/18/2006 |
| Kennesaw State | 0 | at | Georgia Tech | 7 | Box Score | Recap |
|
| 2/18/2006 |
| Louisville | 4 | at | Florida Atlantic | 7 | Box Score | Recap |
|
| 2/18/2006 |
| Marshall |
| at | Belmont |
| | Recap | CCD, inclement weather |
| 2/18/2006 |
| North Florida | 13 | at | UCF | 0 | Box Score | Recap |
|
| 2/18/2006 |
| South Florida | 6 | at | Jacksonville | 11 | Box Score | Recap |
|
| 2/18/2006 |
| Southern Mississippi | 6 | vs | Stetson | 1 | Box Score | Recap | Coca-Cola Classic, Mobile, AL |
| 2/18/2006 |
| Virginia Tech | 16 | at | Campbell | 6 | Box Score | Recap |
|
| 2/19/2006 |
| Bethune-Cookman | 4 | at | Mercer | 6 | Box Score | Recap |
|
| 2/19/2006 |
| Gardner-Webb | 4 | at | Winthrop | 11 | Box Score | Recap | Griffin Pontiac Challenge, Rock Hill, SC |
| 2/19/2006 |
| Kennesaw State | 1 | at | Georgia Tech | 5 | Box Score | Recap |
|
| 2/19/2006 |
| Louisville | 0 | at | Florida Atlantic | 6 | Box Score | Recap |
|
| 2/19/2006 |
| Marshall |
| at | Belmont |
| | Recap | CCD, snow |
| 2/19/2006 |
| North Florida | 6 | at | UCF | 5 | Box Score | Recap |
|
| 2/19/2006 |
| South Florida | 4 | at | Jacksonville | 8 | Box Score | Recap |
|
| 2/19/2006 |
| Stetson | 3 | vs | Wichita State | 8 | Box Score | Recap | Coca-Cola Classic, Mobile, AL |
| 2/21/2006 |
| Appalachian State |
| at | Gardner-Webb |
| | Recap | suspended to 3/28, darkness (4-4, Top 13) |
| 2/21/2006 |
| East Tennessee State | 3 | at | Georgia Tech | 7 | Box Score | Recap |
|
| 2/21/2006 |
| East Tennessee State | 2 | at | Georgia Tech | 5 | Box Score | Recap | moved from 2/22, impending weather |
| 2/21/2006 |
| Jacksonville | 5 | at | Georgia Southern | 2 | Box Score | Recap |
|
| 2/21/2006 |
| Kennesaw State | 9 | at | Alabama State | 0 | Box Score | Recap |
|
| 2/21/2006 |
| North Florida | 6 | at | South Florida | 5 | Box Score | Recap |
|
| 2/21/2006 |
| Stetson | 7 | at | Bethune-Cookman | 1 | Box Score | Recap |
|
| 2/21/2006 |
| Western Kentucky | 4 | at | Belmont | 7 | Box Score | Recap |
|
| 2/22/2006 |
| Alabama-Birmingham |
| at | Kennesaw State |
| | Recap | PPD to 3/29, rain |
| 2/24/2006 |
| Boston College | 3 | at | Kennesaw State | 1 | Box Score | Recap | Kennesaw State Tournament, Kennesaw, GA |
| 2/24/2006 |
| Campbell | 8 | at | North Carolina A&T | 6 | Box Score | Recap |
|
| 2/24/2006 |
| Connecticut |
| at | Florida Atlantic |
| | Recap | PPD to 2/25, rain |
| 2/24/2006 |
| Gardner-Webb | 5 | at | Charleston Southern | 2 | Box Score | Recap | Charleston Challenge, Charleston, SC |
| 2/24/2006 |
| Illinois | 3 | at | Stetson | 6 | Box Score | Recap | Stetson Invitational, DeLand, FL |
| 2/24/2006 |
| Kansas | 4 | at | Belmont | 2 | Box Score | Recap | Music City Challenge, Nashville, TN |
| 2/24/2006 |
| Kent State | 13 | at | Lipscomb | 2 | Box Score | Recap | Music City Challenge, Nashville, TN |
| 2/24/2006 |
| Maryland | 0 | at | Jacksonville | 2 | Box Score | Recap |
|
| 2/24/2006 |
| Mercer | 1 | at | Clemson | 5 | Box Score | Recap |
|
| 2/24/2006 |
| St. Peter's | 4 | vs | Kennesaw State | 5 | Box Score | Recap | moved from 2/25, impending weather (Kennesaw State Tournament, Kennesaw, GA) |
| 2/24/2006 |
| Youngstown State | 5 | at | East Tennessee State | 10 | Box Score | Recap |
|
| 2/24/2006 |
| Youngstown State | 2 | at | East Tennessee State | 4 | Box Score | Recap |
|
| 2/25/2006 |
| Boston College |
| at | Kennesaw State |
| | Recap | PPD to 2/26, rain (Kennesaw State Tournament, Kennesaw, GA) |
| 2/25/2006 |
| Connecticut | 0 | at | Florida Atlantic | 1 | Box Score | Recap | makeup of 2/24 game |
| 2/25/2006 |
| Connecticut | 2 | at | Florida Atlantic | 0 | Box Score | Recap |
|
| 2/25/2006 |
| Gardner-Webb | 2 | vs | Virginia | 6 | Box Score | Recap | Charleston Challenge, Charleston, SC |
| 2/25/2006 |
| Kansas | 15 | at | Lipscomb | 10 | Box Score | Recap | Music City Challenge, Nashville, TN |
| 2/25/2006 |
| Maryland | 8 | at | Jacksonville | 7 | Box Score | Recap |
|
| 2/25/2006 |
| Mercer |
| at | Clemson |
| | Recap | PPD to 2/26, rain |
| 2/25/2006 |
| North Carolina A&T | 2 | at | Campbell | 9 | Box Score | | 250th win for Chip Smith |
| 2/25/2006 |
| Pittsburgh | 14 | at | Belmont | 7 | Box Score | Recap | Music City Challenge, Nashville, TN |
| 2/25/2006 |
| Western Carolina | 4 | at | Stetson | 3 | Box Score | Recap | Stetson Invitational, DeLand, FL |
| 2/25/2006 |
| Western Michigan | 3 | at | North Florida | 2 | Box Score | Recap |
|
| 2/25/2006 |
| Youngstown State | 11 | at | East Tennessee State | 13 | Box Score | Recap |
|
| 2/26/2006 |
| Boston College | 2 | at | Kennesaw State | 6 | Box Score | Recap | makeup of 2/25 game (Kennesaw State Tournament, Kennesaw, GA) |
| 2/26/2006 |
| Connecticut | 9 | at | Florida Atlantic | 1 | Box Score | Recap |
|
| 2/26/2006 |
| Gardner-Webb | 6 | vs | Hofstra | 8 | Box Score | Recap | Charleston Challenge, Charleston, SC |
| 2/26/2006 |
| Kent State | 17 | at | Belmont | 3 | Box Score | Recap | Music City Challenge, Nashville, TN |
| 2/26/2006 |
| Maryland | 4 | at | Jacksonville | 3 | Box Score | Recap | 11 innings |
| 2/26/2006 |
| Mercer | 3 | at | Clemson | 2 | Box Score | Recap | makeup of 2/25 game |
| 2/26/2006 |
| Mercer | 4 | at | Clemson | 9 | Box Score | Recap |
|
| 2/26/2006 |
| Pittsburgh | 0 | at | Lipscomb | 4 | Box Score | Recap | Music City Challenge, Nashville, TN |
| 2/26/2006 |
| South Florida | 2 | at | Stetson | 7 | Box Score | Recap | Stetson Invitational, DeLand, FL |
| 2/26/2006 |
| Western Michigan | 1 | at | North Florida | 0 | Box Score | Recap |
|
| 2/27/2006 |
| Western Michigan | 0 | at | North Florida | 3 | Box Score | Recap |
|
| 2/28/2006 |
| Campbell | 7 | at | Appalachian State | 12 | Box Score | Recap |
|
| 2/28/2006 |
| Kennesaw State | 2 | vs | Western Michigan | 7 | Box Score | Recap | Kennel Club Classic, Jacksonville, FL |
| 2/28/2006 |
| Middle Tennessee State | 5 | at | Belmont | 6 | Box Score | Recap |
|
| 2/28/2006 |
| Tennessee Tech | 7 | at | Lipscomb | 6 | Box Score | Recap |
|
| 3/1/2006 |
| Austin Peay State | 16 | at | Lipscomb | 3 | Box Score | Recap |
|
| 3/1/2006 |
| Gardner-Webb | 8 | at | North Carolina | 11 | Box Score | Recap |
|
| 3/1/2006 |
| Georgia Southern | 8 | at | Mercer | 3 | Box Score | Recap |
|
| 3/1/2006 |
| Kennesaw State | 12 | vs | Western Michigan | 9 | Box Score | Recap | Kennel Club Classic, Jacksonville, FL |
| 3/2/2006 |
| Campbell | 7 | at | Texas Tech | 5 | Box Score | Recap |
|
| 3/2/2006 |
| Western Michigan | 4 | at | Jacksonville | 10 | Box Score | Recap | Kennel Club Classic, Jacksonville, FL |
| 3/3/2006 |
| Campbell | 3 | at | Texas Tech | 5 | Box Score | Recap |
|
| 3/3/2006 |
| Florida Atlantic | 1 | at | Texas Christian | 5 | Box Score | Recap |
|
| 3/3/2006 |
| Mercer | 3 | at | Alabama-Birmingham | 0 | Box Score | Recap | 10 innings |
| 3/3/2006 | * | North Florida | 5 | at | Stetson | 13 | Box Score | Recap |
|
| 3/3/2006 |
| St. John's | 15 | at | East Tennessee State | 1 | Box Score | Recap |
|
| 3/3/2006 |
| Xavier | 7 | at | Gardner-Webb | 3 | Box Score | Recap |
|
| 3/4/2006 |
| Anderson | 17 | at | Kennesaw State | 7 | Box Score | Recap |
|
| 3/4/2006 |
| Anderson | 0 | at | Kennesaw State | 14 | Box Score | Recap |
|
| 3/4/2006 |
| Bradley | 0 | at | Belmont | 7 | Box Score | Recap |
|
| 3/4/2006 |
| Bradley | 0 | at | Belmont | 2 | Box Score | Recap |
|
| 3/4/2006 |
| Campbell | 4 | at | Texas Tech | 6 | Box Score | Recap |
|
| 3/4/2006 |
| Florida Atlantic | 5 | at | Texas Christian | 10 | Box Score | Recap |
|
| 3/4/2006 |
| Lipscomb | 7 | at | Florida A&M | 5 | Box Score | Recap |
|
| 3/4/2006 |
| Lipscomb | 9 | at | Florida A&M | 0 | Box Score | Recap |
|
| 3/4/2006 |
| Mercer | 2 | at | Alabama-Birmingham | 5 | Box Score | Recap |
|
| 3/4/2006 | * | North Florida | 3 | at | Stetson | 2 | Box Score | Recap |
|
| 3/4/2006 |
| Ohio State | 3 | at | Jacksonville | 4 | Box Score | Recap | Kennel Club Classic, Jacksonville, FL |
| 3/4/2006 |
| St. John's | 3 | at | East Tennessee State | 5 | Box Score | Recap |
|
| 3/4/2006 |
| Western Michigan | 0 | at | Jacksonville | 7 | Box Score | Recap | Kennel Club Classic, Jacksonville, FL |
| 3/4/2006 |
| Xavier | 11 | at | Gardner-Webb | 2 | Box Score | Recap |
|
| 3/5/2006 |
| Bradley | 3 | at | Belmont | 6 | Box Score | Recap |
|
| 3/5/2006 |
| Bradley | 0 | at | Belmont | 12 | Box Score | Recap |
|
| 3/5/2006 |
| Florida Atlantic | 4 | at | Texas Christian | 3 | Box Score | Recap |
|
| 3/5/2006 |
| Lipscomb | 5 | at | Florida A&M | 4 | Box Score | Recap |
|
| 3/5/2006 |
| Mercer | 1 | at | Alabama-Birmingham | 8 | Box Score | Recap |
|
| 3/5/2006 | * | North Florida | 9 | at | Stetson | 4 | Box Score | Recap |
|
| 3/5/2006 |
| St. John's | 14 | at | East Tennessee State | 9 | Box Score | Recap |
|
| 3/5/2006 |
| Xavier | 2 | at | Gardner-Webb | 4 | Box Score | Recap |
|
| 3/6/2006 |
| LaSalle | 6 | at | Campbell | 7 | Box Score | Recap |
|
| 3/6/2006 |
| LaSalle | 9 | at | Campbell | 8 | Box Score | Recap |
|
| 3/7/2006 |
| Austin Peay State | 3 | at | North Florida | 2 | Box Score | Recap | 10 innings |
| 3/7/2006 |
| Ball State | 0 | at | Belmont | 3 | Box Score | Recap |
|
| 3/7/2006 |
| Connecticut | 6 | vs | Jacksonville | 7 | Box Score | Recap | Clearwater, FL (10 innings) |
| 3/7/2006 |
| Davidson | 5 | at | Gardner-Webb | 6 | Box Score | Recap |
|
| 3/7/2006 |
| Lipscomb | 7 | at | Samford | 1 | Box Score | Recap |
|
| 3/7/2006 |
| Mercer | 4 | at | Florida State | 8 | Box Score | Recap |
|
| 3/7/2006 |
| Monmouth | 5 | at | Florida Atlantic | 7 | Box Score | Recap |
|
| 3/7/2006 |
| North Carolina State | 13 | at | Campbell | 7 | Box Score | Recap |
|
| 3/7/2006 |
| UCF | 3 | at | Stetson | 4 | Box Score | Recap |
|
| 3/8/2006 |
| Austin Peay State | 3 | at | North Florida | 1 | Box Score | Recap |
|
| 3/8/2006 |
| Creighton | 13 | at | Belmont | 5 | Box Score | Recap |
|
| 3/8/2006 |
| Jacksonville | 7 | vs | Penn State | 3 | Box Score | Recap | Clearwater, FL |
| 3/8/2006 |
| Kennesaw State | 1 | at | Troy | 4 | Box Score | Recap |
|
| 3/8/2006 |
| Tennessee Tech | 7 | at | East Tennessee State | 9 | Box Score | Recap |
|
| 3/10/2006 | * | Belmont | 2 | at | Jacksonville | 12 | Box Score | Recap |
|
| 3/10/2006 | * | Campbell | 1 | at | North Florida | 2 | Box Score | Recap |
|
| 3/10/2006 | * | East Tennessee State | 8 | at | Lipscomb | 6 | Box Score | Recap |
|
| 3/10/2006 | * | Florida Atlantic | 4 | at | Mercer | 6 | Box Score | Recap |
|
| 3/10/2006 | * | Florida Atlantic |
| at | Mercer |
| | Recap | PPD to 3/11, rain |
| 3/10/2006 | * | Gardner-Webb | 13 | at | Kennesaw State | 6 | Box Score | Recap |
|
| 3/10/2006 |
| Stetson | 1 | at | Louisiana State | 5 | Box Score | Recap |
|
| 3/11/2006 | * | Belmont | 5 | at | Jacksonville | 6 | Box Score | Recap |
|
| 3/11/2006 | * | Campbell | 5 | at | North Florida | 6 | Box Score | Recap | 10 innings |
| 3/11/2006 | * | Campbell | 1 | at | North Florida | 8 | Box Score | Recap |
|
| 3/11/2006 | * | East Tennessee State | 14 | at | Lipscomb | 3 | Box Score | Recap |
|
| 3/11/2006 | * | Florida Atlantic | 3 | at | Mercer | 7 | Box Score | Recap | makeup of 3/10 game |
| 3/11/2006 | * | Florida Atlantic | 5 | at | Mercer | 8 | Box Score | Recap |
|
| 3/11/2006 | * | Gardner-Webb | 2 | at | Kennesaw State | 10 | Box Score | Recap |
|
| 3/11/2006 | * | Gardner-Webb | 5 | at | Kennesaw State | 8 | Box Score | Recap |
|
| 3/11/2006 |
| Stetson | 7 | at | Louisiana State | 11 | Box Score | Recap |
|
| 3/12/2006 | * | Belmont | 4 | at | Jacksonville | 1 | Box Score | Recap |
|
| 3/12/2006 | * | East Tennessee State | 3 | at | Lipscomb | 8 | Box Score | Recap |
|
| 3/12/2006 |
| Stetson | 9 | at | Louisiana State | 8 | Box Score | Recap |
|
| 3/13/2006 |
| Siena | 6 | at | East Tennessee State | 19 | Box Score | Recap | 6 innings (rain) |
| 3/14/2006 |
| Kennesaw State | 3 | at | Georgia | 11 | Box Score | Recap |
|
| 3/14/2006 |
| North Florida | 5 | at | Bethune-Cookman | 17 | Box Score | Recap |
|
| 3/14/2006 |
| Rider | 8 | at | Mercer | 12 | Box Score | Recap |
|
| 3/14/2006 |
| Rutgers | 4 | at | Florida Atlantic | 6 | Box Score | Recap |
|
| 3/14/2006 |
| Tennessee-Martin | 4 | at | Belmont | 3 | Box Score | Recap |
|
| 3/14/2006 |
| Wagner | 2 | at | Jacksonville | 7 | Box Score | Recap |
|
| 3/14/2006 |
| Yale | 0 | at | Stetson | 6 | Box Score | Recap |
|
| 3/15/2006 |
| Columbia | 7 | at | Florida Atlantic | 8 | Box Score | Recap |
|
| 3/15/2006 |
| Elon | 7 | at | Campbell | 6 | Box Score | Recap |
|
| 3/15/2006 |
| Gardner-Webb | 5 | at | Clemson | 10 | Box Score | Recap |
|
| 3/15/2006 |
| Rider | 13 | at | Mercer | 11 | Box Score | Recap |
|
| 3/15/2006 |
| Tennessee-Martin | 3 | at | Lipscomb | 4 | Box Score | Recap |
|
| 3/15/2006 |
| Wagner | 5 | at | Jacksonville | 9 | Box Score | Recap |
|
| 3/17/2006 | * | Jacksonville | 7 | at | Campbell | 4 | Box Score | Recap |
|
| 3/17/2006 | * | Jacksonville | 10 | at | Campbell | 11 | Box Score | Recap | 10 innings |
| 3/17/2006 | * | Kennesaw State | 2 | at | Florida Atlantic | 7 | Box Score | Recap |
|
| 3/17/2006 | * | Lipscomb | 4 | at | Belmont | 0 | Box Score | Recap |
|
| 3/17/2006 | * | Stetson | 4 | at | Mercer | 8 | Box Score | Recap |
|
| 3/18/2006 | * | Jacksonville | 6 | at | Campbell | 15 | Box Score | Recap |
|
| 3/18/2006 | * | Kennesaw State | 7 | at | Florida Atlantic | 6 | Box Score | Recap |
|
| 3/18/2006 | * | Kennesaw State | 6 | at | Florida Atlantic | 12 | Box Score | Recap |
|
| 3/18/2006 | * | Lipscomb | 4 | at | Belmont | 7 | Box Score | Recap |
|
| 3/18/2006 | * | North Florida | 7 | at | East Tennessee State | 8 | Box Score | Recap |
|
| 3/18/2006 | * | North Florida | 4 | at | East Tennessee State | 7 | Box Score | Recap |
|
| 3/18/2006 | * | Stetson | 2 | at | Mercer | 5 | Box Score | Recap |
|
| 3/18/2006 | * | Stetson | 19 | at | Mercer | 5 | Box Score | Recap |
|
| 3/19/2006 | * | Lipscomb | 6 | at | Belmont | 5 | Box Score | Recap |
|
| 3/19/2006 | * | North Florida | 18 | at | East Tennessee State | 2 | Box Score | Recap |
|
| 3/21/2006 |
| Alabama State | 6 | at | Kennesaw State | 14 | Box Score | Recap |
|
| 3/21/2006 |
| Belmont |
| at | Vanderbilt |
| | Recap | PPD to 3/22, inclement weather |
| 3/21/2006 |
| Morehead State |
| at | Lipscomb |
| | Recap | CCD, inclement weather |
| 3/21/2006 |
| Stetson | 7 | at | Florida | 6 | Box Score | Recap |
|
| 3/22/2006 |
| Appalachian State |
| at | East Tennessee State |
| | Recap | PPD, field conditions |
| 3/22/2006 |
| Belmont | 0 | at | Vanderbilt | 7 | Box Score | Recap | makeup of 3/21 game |
| 3/22/2006 |
| Florida State | 4 | vs | Jacksonville | 1 | Box Score | Recap | Jacksonville, FL |
| 3/22/2006 |
| Gardner-Webb | 4 | at | Western Carolina | 8 | Box Score | Recap |
|
| 3/22/2006 |
| Longwood | 8 | at | Campbell | 14 | Box Score | Recap |
|
| 3/22/2006 |
| Mercer | 4 | at | Samford | 0 | Box Score | Recap |
|
| 3/24/2006 | * | Belmont | 2 | at | Gardner-Webb | 5 | Box Score | Recap |
|
| 3/24/2006 | * | East Tennessee State | 3 | at | Campbell | 2 | Box Score | Recap |
|
| 3/24/2006 | * | East Tennessee State | 7 | at | Campbell | 1 | Box Score | Recap |
|
| 3/24/2006 | * | Florida Atlantic | 0 | at | North Florida | 1 | Box Score | Recap |
|
| 3/24/2006 |
| Harvard | 3 | at | Jacksonville | 14 | Box Score | Recap |
|
| 3/24/2006 | * | Lipscomb | 0 | at | Stetson | 9 | Box Score | Recap |
|
| 3/24/2006 | * | Mercer | 7 | at | Kennesaw State | 8 | Box Score | Recap | 10 innings |
| 3/25/2006 | * | Belmont | 4 | at | Gardner-Webb | 10 | Box Score | Recap |
|
| 3/25/2006 | * | Belmont | 0 | at | Gardner-Webb | 1 | Box Score | Recap |
|
| 3/25/2006 | * | East Tennessee State | 4 | at | Campbell | 9 | Box Score | Recap |
|
| 3/25/2006 | * | Florida Atlantic | 6 | at | North Florida | 3 | Box Score | Recap |
|
| 3/25/2006 |
| Harvard | 4 | at | Jacksonville | 16 | Box Score | Recap |
|
| 3/25/2006 | * | Lipscomb | 7 | at | Stetson | 5 | Box Score | Recap |
|
| 3/25/2006 | * | Mercer | 10 | at | Kennesaw State | 3 | Box Score | Recap |
|
| 3/25/2006 | * | Mercer | 6 | at | Kennesaw State | 10 | Box Score | Recap |
|
| 3/26/2006 | * | Florida Atlantic | 3 | at | North Florida | 13 | Box Score | Recap |
|
| 3/26/2006 |
| Harvard | 7 | at | Jacksonville | 5 | Box Score | Recap |
|
| 3/26/2006 | * | Lipscomb | 10 | at | Stetson | 8 | Box Score | Recap |
|
| 3/28/2006 |
| Appalachian State | 7 | at | Gardner-Webb | 4 | Box Score | Recap | resumption of suspended game (13 innings) |
| 3/28/2006 |
| Campbell | 7 | at | Longwood | 8 | Box Score | Recap |
|
| 3/28/2006 |
| Gardner-Webb | 9 | at | Appalachian State | 8 | Box Score | Recap |
|
| 3/28/2006 |
| Georgia State | 2 | at | Mercer | 7 | Box Score | Recap |
|
| 3/28/2006 |
| Harvard | 1 | at | Florida Atlantic | 11 | Box Score | Recap |
|
| 3/28/2006 |
| North Florida | 8 | at | Florida State | 14 | Box Score | Recap |
|
| 3/28/2006 |
| Stetson | 5 | at | UCF | 2 | Box Score | Recap |
|
| 3/28/2006 |
| Tennessee Tech | 9 | at | Belmont | 10 | Box Score | Recap |
|
| 3/29/2006 |
| |