| Game Date | Conference | Road Team | Score |
| Home Team | Score | Box Score | Recap | Commentary |
| 2/4/2006 |
| Central Missouri State | 0 | at | Rice | 9 | Box Score | Recap |
|
| 2/4/2006 |
| UCF |
| at | Florida International |
| | Recap | PPD to 2/5, rain |
| 2/5/2006 |
| UCF | 3 | at | Florida International | 4 | Box Score | Recap | makeup of 2/4 game |
| 2/5/2006 |
| UCF | 3 | at | Florida International | 13 | Box Score | Recap |
|
| 2/7/2006 |
| McNeese State | 2 | at | Rice | 6 | Box Score | Recap | Aaron Luna (Rice) hits HRs in first 3 college at bats |
| 2/7/2006 |
| Texas-San Antonio | 10 | at | Houston | 11 | Box Score | Recap | UH: 3 runs w/ 2 outs to tie in 9th, 4 runs w/ 2 outs to win in 10th (10 innings) |
| 2/7/2006 |
| UCF | 8 | at | Bethune-Cookman | 4 | Box Score | Recap |
|
| 2/10/2006 |
| Maryland | 1 | at | East Carolina | 6 | Box Score | Recap |
|
| 2/10/2006 |
| Texas | 3 | vs | Houston | 1 | Box Score | Recap | Houston College Classic, Houston, TX |
| 2/10/2006 |
| Texas Christian | 5 | vs | Tulane | 3 | Box Score | Recap | 10 innings (Houston College Classic, Houston, TX) |
| 2/10/2006 |
| Texas Tech | 1 | vs | Rice | 5 | Box Score | Recap | Houston College Classic, Houston, TX |
| 2/11/2006 |
| Houston | 4 | vs | Texas Christian | 6 | Box Score | Recap | Houston College Classic, Houston, TX |
| 2/11/2006 |
| Maryland |
| at | East Carolina |
| | Recap | PPD to 2/12, rain |
| 2/11/2006 |
| Rice | 4 | vs | Texas | 5 | Box Score | Recap | Houston College Classic, Houston, TX |
| 2/11/2006 |
| Tulane | 6 | vs | Texas Tech | 4 | Box Score | Recap | 800th career win for Rick Jones (Tulane) (Houston College Classic, Houston, TX) |
| 2/12/2006 |
| Houston | 5 | vs | Texas Tech | 1 | Box Score | Recap | Houston College Classic, Houston, TX |
| 2/12/2006 |
| Maryland | 4 | at | East Carolina | 5 | Box Score | Recap |
|
| 2/12/2006 |
| Maryland | 1 | at | East Carolina | 0 | Box Score | Recap | makeup of 2/11 game |
| 2/12/2006 |
| Texas | 2 | vs | Tulane | 4 | Box Score | Recap | Houston College Classic, Houston, TX |
| 2/12/2006 |
| Texas Christian | 6 | vs | Rice | 12 | Box Score | Recap | Houston College Classic, Houston, TX |
| 2/14/2006 |
| McNeese State | 3 | at | Tulane | 5 | Box Score | Recap |
|
| 2/14/2006 |
| Stephen F. Austin | 1 | at | Houston | 8 | Box Score | Recap |
|
| 2/15/2006 |
| Nicholls State | 2 | at | Southern Mississippi | 5 | Box Score | Recap |
|
| 2/17/2006 |
| Ball State | 4 | at | Alabama-Birmingham | 10 | Box Score | Recap |
|
| 2/17/2006 |
| College of Charleston | 0 | at | East Carolina | 5 | Box Score | Recap |
|
| 2/17/2006 |
| Houston | 3 | at | Arizona State | 4 | Box Score | Recap |
|
| 2/17/2006 |
| Marshall | 3 | at | Belmont | 7 | Box Score | Recap |
|
| 2/17/2006 |
| Marshall | 7 | at | Belmont | 5 | Box Score | Recap |
|
| 2/17/2006 |
| North Florida | 1 | at | UCF | 0 | Box Score | Recap | 10 innings |
| 2/17/2006 |
| Oklahoma | 2 | at | Rice | 8 | Box Score | Recap | Coca-Cola Classic, Houston, TX |
| 2/17/2006 |
| Penn State | 4 | at | Tulane | 9 | Box Score | Recap |
|
| 2/17/2006 |
| Wichita State | 5 | vs | Southern Mississippi | 6 | Box Score | Recap | Coca-Cola Classic, Mobile, AL |
| 2/18/2006 |
| Ball State |
| at | Alabama-Birmingham |
| | Recap | PPD to 2/19, inclement weather |
| 2/18/2006 |
| College of Charleston | 2 | at | East Carolina | 4 | Box Score | Recap |
|
| 2/18/2006 |
| Houston | 1 | at | Arizona State | 11 | Box Score | Recap |
|
| 2/18/2006 |
| Long Beach State | 4 | at | Rice | 1 | Box Score | Recap | Coca-Cola Classic, Houston, TX |
| 2/18/2006 |
| Marshall |
| at | Belmont |
| | Recap | CCD, inclement weather |
| 2/18/2006 |
| North Florida | 13 | at | UCF | 0 | Box Score | Recap |
|
| 2/18/2006 |
| Ohio |
| at | Memphis |
| | Recap | CCD, inclement weather |
| 2/18/2006 |
| Penn State | 0 | at | Tulane | 12 | Box Score | Recap |
|
| 2/18/2006 |
| Southern Mississippi | 6 | vs | Stetson | 1 | Box Score | Recap | Coca-Cola Classic, Mobile, AL |
| 2/19/2006 |
| Ball State | 11 | at | Alabama-Birmingham | 10 | Box Score | Recap | 13 innings |
| 2/19/2006 |
| Ball State | 0 | at | Alabama-Birmingham | 3 | Box Score | Recap | makeup of 2/18 game |
| 2/19/2006 |
| College of Charleston | 11 | at | East Carolina | 8 | Box Score | Recap |
|
| 2/19/2006 |
| Houston | 6 | at | Arizona State | 8 | Box Score | Recap |
|
| 2/19/2006 |
| Lamar | 1 | at | Rice | 7 | Box Score | Recap | Coca-Cola Classic, Houston, TX |
| 2/19/2006 |
| Marshall |
| at | Belmont |
| | Recap | CCD, snow |
| 2/19/2006 |
| North Florida | 6 | at | UCF | 5 | Box Score | Recap |
|
| 2/19/2006 |
| Ohio |
| at | Memphis |
| | Recap | CCD, inclement weather |
| 2/19/2006 |
| Penn State | 3 | at | Tulane | 9 | Box Score | Recap |
|
| 2/19/2006 |
| Southern Mississippi | 3 | at | South Alabama | 6 | Box Score | Recap | Coca-Cola Classic, Mobile, AL |
| 2/21/2006 |
| Duke | 5 | at | East Carolina | 19 | Box Score | Recap |
|
| 2/21/2006 |
| Memphis | 2 | at | Alabama | 0 | Box Score | Recap | First shutout of 'Bama at home since '95 |
| 2/21/2006 |
| Mississippi Valley State | 3 | at | Southern Mississippi | 11 | Box Score | Recap |
|
| 2/21/2006 |
| Sam Houston State | 3 | at | Rice | 9 | Box Score | Recap |
|
| 2/21/2006 |
| Tulane | 10 | vs | New Orleans | 2 | Box Score | Recap | Metairie, LA |
| 2/22/2006 |
| Alabama-Birmingham |
| at | Kennesaw State |
| | Recap | PPD to 3/29, rain |
| 2/22/2006 |
| Northwestern State | 3 | at | Houston | 12 | Box Score | Recap |
|
| 2/24/2006 |
| Alabama-Birmingham | 5 | vs | Michigan | 4 | Box Score | Recap | Wiregrass Classic, Dothan, AL |
| 2/24/2006 |
| Birmingham-Southern | 8 | at | Southern Mississippi | 4 | Box Score | Recap |
|
| 2/24/2006 |
| Marshall | 1 | at | Georgia Southern | 8 | Box Score | Recap |
|
| 2/24/2006 |
| Monmouth | 1 | at | Houston | 3 | Box Score | Recap |
|
| 2/24/2006 |
| Oklahoma | 1 | vs | Memphis | 2 | Box Score | Recap | Service Academies Spring Classic, Millington, TN |
| 2/24/2006 |
| Penn State | 3 | at | East Carolina | 4 | Box Score | Recap | Keith LeClair Classic, Greenville, NC |
| 2/24/2006 |
| Pepperdine | 6 | at | Tulane | 2 | Box Score | Recap |
|
| 2/24/2006 |
| St. John's | 7 | at | Rice | 14 | Box Score | Recap | Rice Invitational, Houston, TX |
| 2/24/2006 |
| Stony Brook | 0 | at | UCF | 1 | Box Score | Recap |
|
| 2/25/2006 |
| Alabama-Birmingham |
| vs | South Alabama |
| | Recap | PPD to 2/26, rain (Wiregrass Classic, Dothan, AL) |
| 2/25/2006 |
| Birmingham-Southern |
| at | Southern Mississippi |
| | Recap | PPD to 2/26, rain |
| 2/25/2006 |
| Marshall |
| at | Georgia Southern |
| | Recap | PPD to 2/26, rain |
| 2/25/2006 |
| Memphis | 7 | vs | Notre Dame | 6 | Box Score | Recap | Service Academies Spring Classic, Millington, TN (10 innings) |
| 2/25/2006 |
| Monmouth | 1 | at | Houston | 9 | Box Score | Recap |
|
| 2/25/2006 |
| Nebraska | 2 | at | Rice | 3 | Box Score | Recap | Rice Invitational, Houston, TX |
| 2/25/2006 |
| North Carolina-Wilmington | 2 | at | East Carolina | 11 | Box Score | Recap | Keith LeClair Classic, Greenville, NC |
| 2/25/2006 |
| Pepperdine |
| at | Tulane |
| | Recap | suspended to 2/25, rain (9-4 Tulane, Top 9) |
| 2/25/2006 |
| Stony Brook | 3 | at | UCF | 8 | Box Score | Recap |
|
| 2/26/2006 |
| Alabama-Birmingham | 7 | vs | Troy | 8 | Box Score | Recap | Wiregrass Classic, Dothan, AL |
| 2/26/2006 |
| Birmingham-Southern | 3 | at | Southern Mississippi | 13 | Box Score | Recap | makeup of 2/25 game |
| 2/26/2006 |
| Birmingham-Southern | 5 | at | Southern Mississippi | 6 | Box Score | Recap |
|
| 2/26/2006 |
| Marshall | 0 | at | Georgia Southern | 4 | Box Score | Recap | makeup of 2/25 game |
| 2/26/2006 |
| Marshall | 8 | at | Georgia Southern | 11 | Box Score | Recap |
|
| 2/26/2006 |
| Monmouth | 0 | at | Houston | 6 | Box Score | Recap |
|
| 2/26/2006 |
| Navy | 7 | vs | Memphis | 6 | Box Score | Recap | Service Academies Spring Classic, Millington, TN |
| 2/26/2006 |
| Pepperdine | 4 | at | Tulane | 9 | Box Score | Recap | resumption of suspended game |
| 2/26/2006 |
| Pepperdine | 9 | at | Tulane | 5 | Box Score | Recap |
|
| 2/26/2006 |
| South Alabama | 2 | vs | Alabama-Birmingham | 3 | Box Score | Recap | makeup of 2/25 game (Wiregrass Classic, Dothan, AL) |
| 2/26/2006 |
| Stony Brook | 4 | at | UCF | 5 | Box Score | Recap |
|
| 2/26/2006 |
| Texas State | 2 | at | Rice | 3 | Box Score | Recap | Rice Invitational, Houston, TX |
| 2/26/2006 |
| Virginia Tech | 5 | at | East Carolina | 1 | Box Score | Recap | Keith LeClair Classic, Greenville, NC |
| 2/28/2006 |
| Bethune-Cookman | 14 | at | UCF | 2 | Box Score | Recap |
|
| 2/28/2006 |
| Duke | 4 | at | East Carolina | 17 | Box Score | Recap |
|
| 2/28/2006 |
| Houston | 4 | at | Lamar | 5 | Box Score | Recap |
|
| 2/28/2006 |
| Rice | 6 | at | Texas A&M-Corpus Christi | 4 | Box Score | Recap |
|
| 2/28/2006 |
| Samford | 8 | at | Alabama-Birmingham | 3 | Box Score | Recap | 11 innings |
| 2/28/2006 |
| Tennessee-Martin | 7 | at | Memphis | 9 | Box Score | Recap |
|
| 3/1/2006 |
| Alabama-Birmingham | 10 | at | Samford | 5 | Box Score | Recap |
|
| 3/1/2006 |
| Memphis | 3 | at | Arkansas-Little Rock | 5 | Box Score | Recap |
|
| 3/1/2006 |
| Michigan | 6 | at | UCF | 3 | Box Score | Recap |
|
| 3/1/2006 |
| Southern Mississippi | 8 | at | Southeastern Louisiana | 7 | Box Score | Recap |
|
| 3/3/2006 |
| Buffalo | 8 | at | Marshall | 7 | Box Score | Recap |
|
| 3/3/2006 |
| Cal State Fullerton | 2 | at | Rice | 3 | Box Score | Recap | 10 innings |
| 3/3/2006 |
| Houston | 5 | at | Louisiana State | 3 | Box Score | Recap |
|
| 3/3/2006 |
| Illinois State | 4 | at | Southern Mississippi | 2 | Box Score | Recap |
|
| 3/3/2006 |
| Manhattan | 1 | at | Tulane | 0 | Box Score | Recap |
|
| 3/3/2006 |
| Memphis | 8 | at | Nicholls State | 7 | Box Score | Recap |
|
| 3/3/2006 |
| Mercer | 3 | at | Alabama-Birmingham | 0 | Box Score | Recap | 10 innings |
| 3/3/2006 |
| Monmouth | 2 | at | UCF | 23 | Box Score | Recap |
|
| 3/3/2006 |
| Stony Brook | 0 | at | East Carolina | 12 | Box Score | Recap |
|
| 3/4/2006 |
| Buffalo | 9 | at | Marshall | 10 | Box Score | Recap |
|
| 3/4/2006 |
| Buffalo | 3 | at | Marshall | 20 | Box Score | Recap |
|
| 3/4/2006 |
| Cal State Fullerton | 2 | at | Rice | 6 | Box Score | Recap |
|
| 3/4/2006 |
| Houston | 0 | at | Louisiana State | 7 | Box Score | Recap |
|
| 3/4/2006 |
| Illinois State | 3 | at | Southern Mississippi | 4 | Box Score | Recap |
|
| 3/4/2006 |
| Manhattan | 3 | at | Tulane | 5 | Box Score | Recap |
|
| 3/4/2006 |
| Memphis | 4 | at | Nicholls State | 6 | Box Score | Recap |
|
| 3/4/2006 |
| Mercer | 2 | at | Alabama-Birmingham | 5 | Box Score | Recap |
|
| 3/4/2006 |
| Monmouth | 2 | at | UCF | 1 | Box Score | Recap |
|
| 3/4/2006 |
| Stony Brook | 0 | at | East Carolina | 4 | Box Score | Recap |
|
| 3/5/2006 |
| Buffalo | 7 | at | Marshall | 13 | Box Score | Recap |
|
| 3/5/2006 |
| Cal State Fullerton | 15 | at | Rice | 4 | Box Score | Recap |
|
| 3/5/2006 |
| Houston | 3 | at | Louisiana State | 5 | Box Score | Recap |
|
| 3/5/2006 |
| Illinois State | 3 | at | Southern Mississippi | 15 | Box Score | Recap |
|
| 3/5/2006 |
| Manhattan | 3 | at | Tulane | 5 | Box Score | Recap |
|
| 3/5/2006 |
| Memphis | 17 | at | Nicholls State | 4 | Box Score | Recap |
|
| 3/5/2006 |
| Mercer | 1 | at | Alabama-Birmingham | 8 | Box Score | Recap |
|
| 3/5/2006 |
| Monmouth | 4 | at | UCF | 5 | Box Score | Recap |
|
| 3/5/2006 |
| Stony Brook | 3 | at | East Carolina | 4 | Box Score | Recap | 11 innings |
| 3/7/2006 |
| Birmingham-Southern | 2 | at | Alabama-Birmingham | 3 | Box Score | Recap | 13 innings |
| 3/7/2006 |
| Lamar | 3 | at | Houston | 4 | Box Score | Recap |
|
| 3/7/2006 |
| Louisiana-Monroe | 5 | at | Southern Mississippi | 18 | Box Score | Recap |
|
| 3/7/2006 |
| Middle Tennessee State | 5 | at | Memphis | 11 | Box Score | Recap |
|
| 3/7/2006 |
| Texas | 9 | at | Rice | 5 | Box Score | Recap |
|
| 3/7/2006 |
| Tulane | 3 | at | Louisiana State | 4 | Box Score | Recap |
|
| 3/7/2006 |
| UCF | 3 | at | Stetson | 4 | Box Score | Recap |
|
| 3/8/2006 |
| Georgia State | 8 | at | Alabama-Birmingham | 9 | Box Score | Recap |
|
| 3/8/2006 |
| Louisiana Tech | 12 | vs | Southern Mississippi | 7 | Box Score | Recap | Jackson, MS |
| 3/8/2006 |
| Marshall | 6 | at | Kentucky | 7 | Box Score | Recap |
|
| 3/8/2006 |
| Middle Tennessee State | 3 | at | Memphis | 8 | Box Score | Recap |
|
| 3/8/2006 |
| North Carolina A&T | 3 | at | East Carolina | 14 | Box Score | Recap |
|
| 3/8/2006 |
| Pennsylvania | 2 | at | UCF | 9 | Box Score | Recap |
|
| 3/9/2006 |
| Middle Tennessee State |
| at | Memphis |
| | Recap | CCD, rain |
| 3/10/2006 |
| Buffalo | 3 | at | Southern Mississippi | 13 | Box Score | Recap |
|
| 3/10/2006 |
| East Carolina | 0 | at | Cal State Fullerton | 5 | Box Score | Recap |
|
| 3/10/2006 |
| Houston | 3 | at | UC Irvine | 2 | Box Score | Recap | 400th career victory for Raynor Noble |
| 3/10/2006 |
| Oral Roberts | 5 | at | Tulane | 7 | Box Score | Recap |
|
| 3/10/2006 |
| Rider | 1 | at | Alabama-Birmingham | 13 | Box Score | Recap |
|
| 3/10/2006 |
| Texas Christian | 1 | vs | Rice | 8 | Box Score | Recap | Whataburger Classic, Corpus Christi, TX |
| 3/10/2006 |
| Troy | 16 | at | Memphis | 9 | Box Score | Recap |
|
| 3/11/2006 |
| Buffalo | 3 | at | Southern Mississippi | 21 | Box Score | Recap |
|
| 3/11/2006 |
| East Carolina | 0 | at | Cal State Fullerton | 8 | Box Score | Recap |
|
| 3/11/2006 |
| Houston | 7 | at | UC Irvine | 3 | Box Score | Recap |
|
| 3/11/2006 |
| Niagara |
| at | Marshall |
| | Recap | suspended to 3/12, rain (5-4 Marshall, Bottom 4) |
| 3/11/2006 |
| Niagara |
| at | Marshall |
| | Recap | PPD to 3/13, rain |
| 3/11/2006 |
| Oral Roberts | 13 | at | Tulane | 6 | Box Score | Recap |
|
| 3/11/2006 |
| Rice | 5 | vs | Arizona State | 6 | Box Score | Recap | Whataburger Classic, Corpus Christi, TX (10 innings) |
| 3/11/2006 |
| Rider | 6 | at | Alabama-Birmingham | 12 | Box Score | Recap |
|
| 3/11/2006 |
| Troy | 21 | at | Memphis | 3 | Box Score | Recap |
|
| 3/11/2006 |
| Wagner | 0 | at | UCF | 15 | Box Score | Recap |
|
| 3/12/2006 |
| Buffalo | 2 | at | Southern Mississippi | 14 | Box Score | Recap |
|
| 3/12/2006 |
| East Carolina | 1 | at | Cal State Fullerton | 8 | Box Score | Recap |
|
| 3/12/2006 |
| Houston | 2 | at | UC Irvine | 3 | Box Score | Recap |
|
| 3/12/2006 |
| Niagara |
| at | Marshall |
| | Recap | PPD to 3/13, rain (resumption of suspended game) |
| 3/12/2006 |
| Niagara |
| at | Marshall |
| | Recap | CCD, rain |
| 3/12/2006 |
| Oral Roberts | 3 | at | Tulane | 9 | Box Score | Recap |
|
| 3/12/2006 |
| Rice | 21 | at | Texas A&M-Corpus Christi | 1 | Box Score | Recap | Whataburger Classic, Corpus Christi, TX |
| 3/12/2006 |
| Rider | 7 | at | Alabama-Birmingham | 11 | Box Score | Recap |
|
| 3/12/2006 |
| Troy | 18 | at | Memphis | 11 | Box Score | Recap |
|
| 3/12/2006 |
| Wagner | 2 | at | UCF | 5 | Box Score | Recap |
|
| 3/13/2006 |
| Niagara | 12 | at | Marshall | 8 | Box Score | Recap | resumption of suspended game |
| 3/13/2006 |
| Niagara | 2 | at | Marshall | 13 | Box Score | Recap | makeup of 3/11 game |
| 3/13/2006 |
| Wagner | 0 | at | UCF | 11 | Box Score | Recap |
|
| 3/14/2006 |
| Baylor | 3 | at | Houston | 5 | Box Score | Recap |
|
| 3/14/2006 |
| Florida | 10 | at | UCF | 3 | Box Score | Recap |
|
| 3/14/2006 |
| Memphis | 13 | at | Murray State | 6 | Box Score | Recap |
|
| 3/14/2006 |
| Mississippi State | 20 | at | Alabama-Birmingham | 4 | Box Score | Recap |
|
| 3/14/2006 |
| Nicholls State | 7 | at | Tulane | 4 | Box Score | Recap |
|
| 3/14/2006 |
| Pittsburgh |
| at | Marshall |
| | Recap | CCD, field conditions |
| 3/14/2006 |
| San Diego | 2 | at | Rice | 11 | Box Score | Recap |
|
| 3/15/2006 |
| East Carolina | 4 | at | North Carolina-Wilmington | 0 | Box Score | Recap |
|
| 3/15/2006 |
| Rice | 8 | at | Sam Houston State | 9 | Box Score | Recap |
|
| 3/15/2006 |
| Southern Mississippi | 3 | at | Alabama | 13 | Box Score | Recap |
|
| 3/17/2006 |
| Cleveland State | 7 | at | Marshall | 16 | Box Score | Recap |
|
| 3/17/2006 |
| Marist | 5 | at | East Carolina | 9 | Box Score | Recap |
|
| 3/17/2006 |
| North Carolina A&T | 6 | at | Alabama-Birmingham | 2 | Box Score | Recap |
|
| 3/17/2006 |
| San Diego | 9 | at | Houston | 4 | Box Score | Recap | 11 innings |
| 3/17/2006 |
| Siena | 5 | at | UCF | 16 | Box Score | Recap |
|
| 3/17/2006 |
| South Alabama | 3 | at | Tulane | 6 | Box Score | Recap |
|
| 3/17/2006 |
| Southeast Missouri State | 1 | at | Memphis | 5 | Box Score | Recap |
|
| 3/17/2006 |
| Troy | 1 | at | Southern Mississippi | 5 | Box Score | Recap |
|
| 3/18/2006 |
| Cleveland State | 9 | at | Marshall | 20 | Box Score | Recap |
|
| 3/18/2006 |
| Marist | 0 | at | East Carolina | 7 | Box Score | Recap |
|
| 3/18/2006 |
| North Carolina A&T | 6 | at | Alabama-Birmingham | 5 | Box Score | Recap |
|
| 3/18/2006 |
| North Carolina A&T | 1 | at | Alabama-Birmingham | 12 | Box Score | Recap | moved from 3/19, impending weather |
| 3/18/2006 |
| San Diego | 2 | at | Houston | 0 | Box Score | Recap |
|
| 3/18/2006 |
| Siena | 2 | at | UCF | 3 | Box Score | Recap | 10 innings |
| 3/18/2006 |
| South Alabama | 8 | at | Tulane | 4 | Box Score | Recap |
|
| 3/18/2006 |
| Southeast Missouri State | 1 | at | Memphis | 15 | Box Score | Recap |
|
| 3/18/2006 |
| Texas A&M-Corpus Christi | 2 | at | Rice | 17 | Box Score | Recap |
|
| 3/18/2006 |
| Troy | 2 | at | Southern Mississippi | 3 | Box Score | Recap | 11 innings |
| 3/19/2006 |
| Cleveland State | 1 | at | Marshall | 6 | Box Score | Recap |
|
| 3/19/2006 |
| Marist | 2 | at | East Carolina | 5 | Box Score | Recap |
|
| 3/19/2006 |
| San Diego | 2 | at | Houston | 3 | Box Score | Recap |
|
| 3/19/2006 |
| Siena | 3 | at | UCF | 10 | Box Score | Recap |
|
| 3/19/2006 |
| Texas A&M-Corpus Christi | 0 | at | Rice | 3 | Box Score | Recap |
|
| 3/19/2006 |
| Troy | 1 | at | Southern Mississippi | 6 | Box Score | Recap |
|
| 3/19/2006 |
| Tulane | 7 | at | South Alabama | 2 | Box Score | Recap |
|
| 3/21/2006 |
| Alabama-Birmingham | 3 | at | Mississippi State | 10 | Box Score | Recap |
|
| 3/21/2006 |
| Mississippi | 8 | at | Memphis | 4 | Box Score | Recap |
|
| 3/21/2006 |
| New Orleans | 3 | at | Tulane | 4 | Box Score | Recap |
|
| 3/21/2006 |
| South Alabama | 4 | at | Southern Mississippi | 7 | Box Score | Recap |
|
| 3/21/2006 |
| Texas A&M | 3 | at | Houston | 2 | Box Score | Recap |
|
| 3/21/2006 |
| UCF | 10 | at | Bethune-Cookman | 8 | Box Score | Recap |
|
| 3/22/2006 |
| Marshall | 0 | at | Virginia | 12 | Box Score | Recap |
|
| 3/22/2006 |
| Memphis | 3 | at | Arkansas State | 5 | Box Score | Recap |
|
| 3/22/2006 |
| North Carolina-Wilmington | 14 | at | East Carolina | 6 | Box Score | Recap |
|
| 3/22/2006 |
| Rice | 2 | at | Texas | 3 | Box Score | Recap |
|
| 3/22/2006 |
| Southern Mississippi | 1 | at | Louisiana-Monroe | 2 | Box Score | Recap |
|
| 3/24/2006 | * | East Carolina | 4 | at | Rice | 3 | Box Score | Recap |
|
| 3/24/2006 | * | Marshall | 0 | at | Houston | 7 | Box Score | Recap |
|
| 3/24/2006 | * | Southern Mississippi | 8 | at | Alabama-Birmingham | 2 | Box Score | Recap |
|
| 3/24/2006 | * | Tulane | 4 | at | Memphis | 11 | Box Score | Recap |
|
| 3/24/2006 |
| UCF | 1 | at | Texas Christian | 2 | Box Score | Recap |
|
| 3/25/2006 | * | East Carolina | 5 | at | Rice | 8 | Box Score | Recap |
|
| 3/25/2006 | * | Marshall | 1 | at | Houston | 4 | Box Score | Recap |
|
| 3/25/2006 | * | Southern Mississippi | 7 | at | Alabama-Birmingham | 4 | Box Score | Recap |
|
| 3/25/2006 | * | Tulane | 7 | at | Memphis | 1 | Box Score | Recap |
|
| 3/25/2006 |
| UCF | 5 | at | Texas Christian | 1 | Box Score | Recap |
|
| 3/26/2006 | * | East Carolina | 0 | at | Rice | 5 | Box Score | Recap |
|
| 3/26/2006 | * | Marshall | 1 | at | Houston | 15 | Box Score | Recap |
|
| 3/26/2006 | * | Southern Mississippi | 12 | at | Alabama-Birmingham | 1 | Box Score | Recap |
|
| 3/26/2006 | * | Tulane | 10 | at | Memphis | 2 | Box Score | Recap |
|
| 3/26/2006 |
| UCF | 5 | at | Texas Christian | 3 | Box Score | Recap | 10 innings |
| 3/28/2006 |
| Alabama-Birmingham | 1 | at | Jacksonville State | 5 | Box Score | Recap |
|
| 3/28/2006 |
| Jackson State | 4 | at | Tulane | 14 | Box Score | Recap |
|
| 3/28/2006 |
| James Madison |
| at | Marshall |
| | Recap | suspended to 3/29, rain (4-3 Marshall, Top 5) |
| 3/28/2006 |
| Memphis | 6 | at | Austin Peay State | 14 | Box Score | Recap |
|
| 3/28/2006 |
| Prairie View A&M |
| at | Houston |
| | Recap | PPD, rain |
| 3/28/2006 |
| Rice |
| at | Texas State |
| | Recap | PPD to 3/29, rain |
| 3/28/2006 |
| Southern Mississippi | 8 | at | Mississippi | 9 | Box Score | Recap |
|
| 3/28/2006 |
| Stetson | 5 | at | UCF | 2 | Box Score | Recap |
|
| 3/29/2006 |
| Alabama-Birmingham | 6 | at | Kennesaw State | 8 | Box Score | Recap | makeup of 2/22 game |
| 3/29/2006 |
| Austin Peay State | 11 | at | Memphis | 9 | Box Score | Recap |
|
| 3/29/2006 |
| East Carolina | 4 | at | North Carolina State | 5 | Box Score | Recap |
|
| 3/29/2006 |
| James Madison | 6 | at | Marshall | 8 | Box Score | Recap | resumption of suspended game |
| 3/29/2006 |
| James Madison | 8 | at | Marshall | 9 | Box Score | Recap |
|
| 3/29/2006 |
| Rice | 11 | at | Texas State | 1 | Box Score | Recap | makeup of 3/28 game |
| 3/31/2006 |
| Alabama-Birmingham | 1 | at | Louisiana Tech | 3 | Box Score | Recap |
|
| 3/31/2006 | * | Houston | 4 | at | East Carolina | 3 | Box Score | Recap |
|
| 3/31/2006 | * | Memphis | 5 | at | Southern Mississippi | 4 | Box Score | Recap |
|
| 3/31/2006 | * | Rice | 3 | at | Tulane | 1 | Box Score | Recap |
|
| 3/31/2006 | * | UCF | 18 | at | Marshall | 1 | Box Score | Recap | Charleston, WV |
| 4/1/2006 |
| Alabama-Birmingham | 8 | at | Louisiana Tech | 11 | Box Score | Recap |
|
| 4/1/2006 | * | Houston | 13 | at | East Carolina | 4 | Box Score | Recap |
|
| 4/1/2006 | * | Memphis | 7 | at | Southern Mississippi | 8 | Box Score | Recap |
|
| 4/1/2006 | * | Rice | 3 | at | Tulane | 2 | Box Score | Recap |
|
| 4/1/2006 | * | UCF | 7 | at | Marshall | 5 | Box Score | Recap | Charleston, WV |
| 4/2/2006 |
| Alabama-Birmingham | 2 | at | Louisiana Tech | 6 |