| Game Date | Conference | Road Team | Score |
| Home Team | Score | Box Score | Recap | Commentary |
| 2/1/2006 |
| San Diego State | 2 | at | Hawaii | 6 | Box Score | Recap |
|
| 2/2/2006 |
| San Diego State | 9 | at | Hawaii | 11 | Box Score | Recap |
|
| 2/3/2006 |
| Nevada-Las Vegas | 4 | at | Pepperdine | 5 | Box Score | Recap |
|
| 2/3/2006 |
| San Diego State | 7 | at | Hawaii | 9 | Box Score | Recap |
|
| 2/3/2006 |
| Utah | 1 | at | New Mexico State | 4 | Box Score | Recap |
|
| 2/4/2006 |
| Colorado Christian | 0 | at | Air Force | 5 | Box Score | Recap |
|
| 2/4/2006 |
| Colorado Christian | 1 | at | Air Force | 2 | Box Score | Recap |
|
| 2/4/2006 |
| Nevada-Las Vegas | 6 | at | Pepperdine | 3 | Box Score | Recap |
|
| 2/4/2006 |
| San Diego State | 7 | at | Hawaii | 5 | Box Score | Recap |
|
| 2/4/2006 |
| Utah | 5 | at | New Mexico State | 12 | Box Score | Recap |
|
| 2/5/2006 |
| Nevada-Las Vegas | 2 | at | Pepperdine | 8 | Box Score | Recap |
|
| 2/5/2006 |
| Utah | 21 | at | New Mexico State | 9 | Box Score | Recap |
|
| 2/7/2006 |
| New Mexico | 5 | at | New Mexico State | 3 | Box Score | Recap |
|
| 2/8/2006 |
| Northern Colorado | 13 | at | Air Force | 5 | Box Score | Recap | Pueblo, CO |
| 2/9/2006 |
| Brigham Young | 1 | at | Pacific | 2 | Box Score | Recap |
|
| 2/10/2006 |
| Brigham Young | 3 | at | Pacific | 6 | Box Score | Recap |
|
| 2/10/2006 |
| Nevada-Las Vegas | 1 | at | Cal State Fullerton | 9 | Box Score | Recap |
|
| 2/10/2006 |
| New Mexico | 0 | at | Texas State | 2 | Box Score | Recap |
|
| 2/10/2006 |
| San Diego State | 3 | at | Santa Clara | 4 | Box Score | Recap |
|
| 2/10/2006 |
| Texas Christian | 5 | vs | Tulane | 3 | Box Score | Recap | 10 innings (Houston College Classic, Houston, TX) |
| 2/10/2006 |
| Utah | 4 | at | Texas-San Antonio | 5 | Box Score | Recap |
|
| 2/11/2006 |
| Brigham Young | 3 | at | Pacific | 4 | Box Score | Recap |
|
| 2/11/2006 |
| Houston | 4 | vs | Texas Christian | 6 | Box Score | Recap | Houston College Classic, Houston, TX |
| 2/11/2006 |
| Nevada-Las Vegas | 4 | at | Cal State Fullerton | 13 | Box Score | Recap |
|
| 2/11/2006 |
| New Mexico | 7 | at | Texas State | 3 | Box Score | Recap | 10 innings |
| 2/11/2006 |
| San Diego State | 10 | at | Santa Clara | 4 | Box Score | Recap |
|
| 2/11/2006 |
| Utah | 10 | at | Texas-San Antonio | 1 | Box Score | Recap |
|
| 2/11/2006 |
| York (NE) |
| at | Air Force |
| | Recap | PPD to 2/12, snow |
| 2/11/2006 |
| York (NE) |
| at | Air Force |
| | Recap | PPD to 2/12, snow |
| 2/12/2006 |
| Nevada-Las Vegas | 1 | at | Cal State Fullerton | 3 | Box Score | Recap |
|
| 2/12/2006 |
| New Mexico | 3 | at | Texas State | 2 | Box Score | Recap | 10 innings |
| 2/12/2006 |
| San Diego State | 6 | at | Santa Clara | 10 | Box Score | Recap |
|
| 2/12/2006 |
| Texas Christian | 6 | vs | Rice | 12 | Box Score | Recap | Houston College Classic, Houston, TX |
| 2/12/2006 |
| Utah | 6 | at | Texas-San Antonio | 9 | Box Score | Recap |
|
| 2/12/2006 |
| York (NE) | 1 | at | Air Force | 2 | Box Score | Recap | makeup of 2/11 game (Pueblo, CO) |
| 2/12/2006 |
| York (NE) | 3 | at | Air Force | 4 | Box Score | Recap | makeup of 2/11 game (Pueblo, CO) |
| 2/14/2006 |
| Texas State | 5 | at | Texas Christian | 1 | Box Score | Recap |
|
| 2/14/2006 |
| Texas Tech | 8 | at | New Mexico | 7 | Box Score | Recap | 10 innings |
| 2/16/2006 |
| Brigham Young | 1 | at | San Jose State | 4 | Box Score | Recap |
|
| 2/17/2006 |
| Brigham Young | 3 | at | San Jose State | 4 | Box Score | Recap |
|
| 2/17/2006 |
| Cal Poly | 11 | at | San Diego State | 2 | Box Score | Recap |
|
| 2/17/2006 |
| Illinois-Chicago | 3 | vs | Air Force | 10 | Box Score | Recap | Mesa, AZ |
| 2/17/2006 |
| Nevada-Las Vegas | 0 | at | Nevada | 6 | Box Score | Recap |
|
| 2/17/2006 |
| New Mexico | 6 | at | Arizona | 5 | Box Score | Recap |
|
| 2/17/2006 |
| Texas Christian | 2 | vs | Arkansas | 5 | Box Score | Recap | Al Ogletree Classic, Edinburg, TX |
| 2/17/2006 |
| Utah | 3 | at | UC Davis | 2 | Box Score | Recap |
|
| 2/18/2006 |
| Air Force | 1 | vs | Illinois-Chicago | 14 | Box Score | Recap | Mesa, AZ |
| 2/18/2006 |
| Brigham Young | 3 | at | San Jose State | 4 | Box Score | Recap |
|
| 2/18/2006 |
| Cal Poly | 4 | at | San Diego State | 1 | Box Score | Recap |
|
| 2/18/2006 |
| Creighton | 9 | vs | Air Force | 2 | Box Score | Recap | Mesa, AZ |
| 2/18/2006 |
| Nevada-Las Vegas |
| at | Nevada |
| | Recap | CCD, snow |
| 2/18/2006 |
| New Mexico | 7 | at | Arizona | 3 | Box Score | Recap |
|
| 2/18/2006 |
| Texas Christian | 9 | at | Texas-Pan American | 4 | Box Score | Recap | Al Ogletree Classic, Edinburg, TX |
| 2/18/2006 |
| Utah | 1 | at | UC Davis | 9 | Box Score | Recap |
|
| 2/19/2006 |
| Cal Poly | 8 | at | San Diego State | 10 | Box Score | Recap |
|
| 2/19/2006 |
| Nevada-Las Vegas | 2 | at | Nevada | 3 | Box Score | Recap |
|
| 2/19/2006 |
| New Mexico | 16 | at | Arizona | 19 | Box Score | Recap |
|
| 2/19/2006 |
| Stephen F. Austin | 0 | vs | Texas Christian | 13 | Box Score | Recap | No-hitter for Brad Furnish (Al Ogletree Classic, Edinburg, TX) |
| 2/19/2006 |
| Utah | 9 | at | UC Davis | 6 | Box Score | Recap |
|
| 2/21/2006 |
| Air Force |
| at | Northern Colorado |
| | Recap | PPD, field conditions |
| 2/21/2006 |
| New Mexico State | 12 | at | New Mexico | 6 | Box Score | Recap |
|
| 2/21/2006 |
| San Diego State | 6 | at | Southern California | 1 | Box Score | Recap |
|
| 2/23/2006 |
| Brigham Young | 2 | vs | Oregon State | 12 | Box Score | Recap | River City Classic, Davis, CA |
| 2/24/2006 |
| Brigham Young | 1 | vs | Washington State | 5 | Box Score | Recap | River City Classic, Davis, CA |
| 2/24/2006 |
| Eastern Michigan | 9 | at | Nevada-Las Vegas | 7 | Box Score | Recap | 13 innings |
| 2/24/2006 |
| Missouri State | 1 | vs | Utah | 4 | Box Score | Recap | Domino's Pizza Aggie Baseball Classic, College Station, TX |
| 2/24/2006 |
| Notre Dame | 8 | vs | Air Force | 2 | Box Score | Recap | Service Academies Spring Classic, Millington, TN |
| 2/24/2006 |
| San Diego State | 2 | at | UC Irvine | 4 | Box Score | Recap |
|
| 2/24/2006 |
| Utah Valley State | 3 | at | New Mexico | 9 | Box Score | Recap |
|
| 2/24/2006 |
| Wright State |
| at | Texas Christian |
| | Recap | PPD to 2/25, rain |
| 2/25/2006 |
| Air Force | 6 | vs | Navy | 11 | Box Score | Recap | Service Academies Spring Classic, Millington, TN |
| 2/25/2006 |
| Eastern Michigan | 5 | at | Nevada-Las Vegas | 18 | Box Score | Recap |
|
| 2/25/2006 |
| San Diego State | 1 | at | UC Irvine | 12 | Box Score | Recap |
|
| 2/25/2006 |
| St. Mary's | 5 | vs | Brigham Young | 10 | Box Score | Recap | River City Classic, Sacramento, CA |
| 2/25/2006 |
| Utah | 1 | at | Texas A&M | 6 | Box Score | Recap | Domino's Pizza Aggie Baseball Classic, College Station, TX |
| 2/25/2006 |
| Utah Valley State | 0 | at | New Mexico | 3 | Box Score | Recap |
|
| 2/25/2006 |
| Wright State | 6 | at | Texas Christian | 4 | Box Score | Recap | makeup of 2/24 game |
| 2/25/2006 |
| Wright State | 4 | at | Texas Christian | 8 | Box Score | Recap |
|
| 2/26/2006 |
| Eastern Michigan | 5 | at | Nevada-Las Vegas | 23 | Box Score | Recap |
|
| 2/26/2006 |
| Indiana State | 6 | vs | Air Force | 5 | Box Score | Recap | Service Academies Spring Classic, Millington, TN |
| 2/26/2006 |
| UC Irvine | 8 | at | San Diego State | 6 | Box Score | Recap | 10 innings |
| 2/26/2006 |
| Utah | 5 | vs | North Carolina-Greensboro | 6 | Box Score | Recap | Domino's Pizza Aggie Baseball Classic, College Station, TX |
| 2/26/2006 |
| Utah Valley State | 6 | at | New Mexico | 9 | Box Score | Recap |
|
| 2/26/2006 |
| Wright State | 2 | at | Texas Christian | 4 | Box Score | Recap |
|
| 2/27/2006 |
| Utah | 6 | vs | Missouri State | 3 | Box Score | Recap | Domino's Pizza Aggie Baseball Classic, College Station, TX |
| 2/28/2006 |
| Dallas Baptist | 11 | at | Texas Christian | 8 | Box Score | Recap |
|
| 2/28/2006 |
| New Mexico | 15 | at | New Mexico State | 12 | Box Score | Recap |
|
| 2/28/2006 |
| Southern California |
| at | San Diego State |
| | Recap | PPD, rain |
| 2/28/2006 |
| UC Irvine | 7 | at | Nevada-Las Vegas | 10 | Box Score | Recap | moved from UCI, rain |
| 3/2/2006 |
| Brigham Young | 2 | at | Southern Utah | 5 | Box Score | Recap |
|
| 3/3/2006 |
| Air Force | 10 | at | Utah Valley State | 8 | Box Score | Recap |
|
| 3/3/2006 |
| Air Force | 11 | at | Utah Valley State | 4 | Box Score | Recap |
|
| 3/3/2006 |
| Brigham Young | 9 | at | Southern Utah | 2 | Box Score | Recap |
|
| 3/3/2006 |
| Florida Atlantic | 1 | at | Texas Christian | 5 | Box Score | Recap |
|
| 3/3/2006 |
| Northern Colorado | 4 | at | New Mexico | 9 | Box Score | Recap |
|
| 3/3/2006 |
| Pepperdine | 1 | at | San Diego State | 3 | Box Score | Recap |
|
| 3/3/2006 |
| Texas | 12 | at | Nevada-Las Vegas | 13 | Box Score | Recap |
|
| 3/4/2006 |
| Air Force | 7 | at | Utah Valley State | 11 | Box Score | Recap |
|
| 3/4/2006 |
| Brigham Young | 6 | at | Southern Utah | 3 | Box Score | Recap |
|
| 3/4/2006 |
| Florida Atlantic | 5 | at | Texas Christian | 10 | Box Score | Recap |
|
| 3/4/2006 |
| Northern Colorado | 1 | at | New Mexico | 21 | Box Score | Recap |
|
| 3/4/2006 |
| Pepperdine | 3 | at | San Diego State | 13 | Box Score | Recap |
|
| 3/4/2006 |
| Texas | 8 | at | Nevada-Las Vegas | 9 | Box Score | Recap |
|
| 3/5/2006 |
| Florida Atlantic | 4 | at | Texas Christian | 3 | Box Score | Recap |
|
| 3/5/2006 |
| Northern Colorado | 6 | at | New Mexico | 19 | Box Score | Recap |
|
| 3/5/2006 |
| Pepperdine | 11 | at | San Diego State | 7 | Box Score | Recap |
|
| 3/5/2006 |
| Texas | 9 | at | Nevada-Las Vegas | 8 | Box Score | Recap |
|
| 3/6/2006 |
| Texas Tech | 9 | at | Nevada-Las Vegas | 0 | Box Score | Recap |
|
| 3/7/2006 |
| New Mexico State | 6 | at | New Mexico | 7 | Box Score | Recap |
|
| 3/7/2006 |
| Northern Colorado | 7 | at | Air Force | 3 | Box Score | Recap |
|
| 3/7/2006 |
| Oklahoma | 10 | at | Texas Christian | 5 | Box Score | Recap |
|
| 3/7/2006 |
| San Diego State | 5 | at | Cal State Fullerton | 10 | Box Score | Recap |
|
| 3/7/2006 |
| Texas Tech | 11 | at | Nevada-Las Vegas | 16 | Box Score | Recap |
|
| 3/9/2006 |
| Brigham Young | 3 | at | UC Riverside | 7 | Box Score | Recap |
|
| 3/9/2006 |
| Brigham Young | 1 | at | UC Riverside | 2 | Box Score | Recap | moved from 3/11, impending weather |
| 3/9/2006 |
| Utah | 11 | vs | Southern Utah | 5 | Box Score | Recap | St. George, UT (moved from SUU, snow) |
| 3/9/2006 |
| Utah | 10 | vs | Southern Utah | 12 | Box Score | Recap | St. George, UT (moved from SUU, snow) (10 innings) |
| 3/10/2006 |
| Air Force | 3 | at | Wright State | 9 | Box Score | Recap |
|
| 3/10/2006 |
| Brigham Young | 9 | at | UC Riverside | 5 | Box Score | Recap |
|
| 3/10/2006 |
| California | 5 | at | Nevada-Las Vegas | 1 | Box Score | Recap |
|
| 3/10/2006 |
| Oregon State | 10 | at | New Mexico | 4 | Box Score | Recap |
|
| 3/10/2006 |
| San Diego State | 1 | at | San Diego | 3 | Box Score | Recap |
|
| 3/10/2006 |
| Texas Christian | 1 | vs | Rice | 8 | Box Score | Recap | Whataburger Classic, Corpus Christi, TX |
| 3/10/2006 |
| Utah |
| vs | Southern Utah |
| | Recap | suspended, snow (4-0 Utah, Bottom 4th) (St. George, UT (moved from SUU, snow)) |
| 3/11/2006 |
| Air Force | 0 | at | Wright State | 1 | Box Score | Recap |
|
| 3/11/2006 |
| Air Force | 0 | at | Wright State | 9 | Box Score | Recap |
|
| 3/11/2006 |
| California | 6 | at | Nevada-Las Vegas | 9 | Box Score | Recap |
|
| 3/11/2006 |
| Oregon State | 2 | at | New Mexico | 13 | Box Score | Recap |
|
| 3/11/2006 |
| San Diego |
| at | San Diego State |
| | Recap | PPD to 3/12, field conditions |
| 3/11/2006 |
| Texas Christian | 6 | at | Texas A&M-Corpus Christi | 1 | Box Score | Recap | Whataburger Classic, Corpus Christi, TX |
| 3/12/2006 |
| Arizona State | 3 | vs | Texas Christian | 1 | Box Score | Recap | Whataburger Classic, Corpus Christi, TX |
| 3/12/2006 |
| California | 4 | at | Nevada-Las Vegas | 5 | Box Score | Recap |
|
| 3/12/2006 |
| Oregon State |
| at | New Mexico |
| | Recap | CCD, snow |
| 3/12/2006 |
| San Diego | 10 | at | San Diego State | 5 | Box Score | Recap | makeup of 3/11 game |
| 3/12/2006 |
| San Diego State | 1 | at | San Diego | 16 | Box Score | Recap |
|
| 3/14/2006 |
| Nevada-Las Vegas | 2 | at | UCLA | 16 | Box Score | Recap |
|
| 3/14/2006 |
| San Diego State | 7 | at | Oklahoma State | 10 | Box Score | Recap |
|
| 3/14/2006 |
| Texas Christian | 3 | at | Texas State | 1 | Box Score | Recap |
|
| 3/14/2006 |
| Utah | 5 | at | Brigham Young | 4 | Box Score | Recap |
|
| 3/15/2006 |
| San Diego State | 6 | at | Oklahoma State | 16 | Box Score | Recap |
|
| 3/16/2006 |
| New Mexico State | 1 | at | Brigham Young | 3 | Box Score | Recap |
|
| 3/17/2006 |
| New Mexico State | 3 | at | Brigham Young | 10 | Box Score | Recap |
|
| 3/17/2006 |
| Portland | 10 | at | Utah | 8 | Box Score | Recap |
|
| 3/17/2006 |
| San Diego State | 6 | at | UCLA | 14 | Box Score | Recap |
|
| 3/17/2006 |
| San Francisco | 10 | at | New Mexico | 9 | Box Score | Recap |
|
| 3/17/2006 |
| Texas Christian |
| at | UC Santa Barbara |
| | Recap | PPD to 3/19, rain |
| 3/17/2006 |
| The Citadel | 6 | at | Nevada-Las Vegas | 22 | Box Score | Recap |
|
| 3/18/2006 |
| New Mexico State | 6 | at | Brigham Young | 8 | Box Score | Recap |
|
| 3/18/2006 |
| Portland | 8 | at | Utah | 1 | Box Score | Recap | 6 innings (rain) |
| 3/18/2006 |
| San Diego State | 2 | at | UCLA | 12 | Box Score | Recap |
|
| 3/18/2006 |
| San Francisco | 11 | at | New Mexico | 6 | Box Score | Recap | 10 innings |
| 3/18/2006 |
| Texas Christian | 3 | at | UC Santa Barbara | 13 | Box Score | Recap |
|
| 3/18/2006 |
| The Citadel | 1 | at | Nevada-Las Vegas | 8 | Box Score | Recap |
|
| 3/19/2006 |
| Portland |
| at | Utah |
| | Recap | CCD, snow |
| 3/19/2006 |
| San Diego State | 1 | at | UCLA | 9 | Box Score | Recap |
|
| 3/19/2006 |
| San Francisco | 7 | at | New Mexico | 10 | Box Score | Recap |
|
| 3/19/2006 |
| Texas Christian | 4 | at | UC Santa Barbara | 5 | Box Score | Recap | makeup of 3/17 game |
| 3/19/2006 |
| Texas Christian | 8 | at | UC Santa Barbara | 5 | Box Score | Recap |
|
| 3/19/2006 |
| The Citadel | 7 | at | Nevada-Las Vegas | 8 | Box Score | Recap | 10 innings |
| 3/20/2006 |
| New Mexico State |
| at | Utah |
| | Recap | CCD, inclement weather |
| 3/21/2006 |
| New Mexico State | 4 | at | Utah | 6 | Box Score | Recap | makeup of 3/20 game |
| 3/21/2006 |
| Southern Utah |
| at | Brigham Young |
| | Recap | PPD to 3/22, field conditions |
| 3/21/2006 |
| Texas Christian | 4 | at | Baylor | 10 | Box Score | Recap |
|
| 3/22/2006 |
| Southern Utah | 17 | at | Brigham Young | 8 | Box Score | Recap | makeup of 3/21 game |
| 3/23/2006 |
| Dallas Baptist | 9 | at | New Mexico | 10 | Box Score | Recap | 10 innings |
| 3/23/2006 |
| Northern Colorado | 3 | at | Brigham Young | 4 | Box Score | Recap |
|
| 3/24/2006 |
| Dallas Baptist | 3 | at | New Mexico | 4 | Box Score | Recap |
|
| 3/24/2006 |
| Nevada-Las Vegas | 6 | at | San Diego | 7 | Box Score | Recap |
|
| 3/24/2006 |
| Northern Colorado | 2 | at | Brigham Young | 3 | Box Score | Recap | 10 innings |
| 3/24/2006 |
| Pacific | 7 | at | San Diego State | 2 | Box Score | Recap |
|
| 3/24/2006 |
| Southern Utah | 7 | at | Air Force | 2 | Box Score | Recap | Pueblo, CO |
| 3/24/2006 |
| UCF | 1 | at | Texas Christian | 2 | Box Score | Recap |
|
| 3/24/2006 |
| Utah |
| at | St. Mary's |
| | Recap | suspended to 3/25, rain (6-3 Utah, Bot 4) |
| 3/25/2006 |
| Dallas Baptist | 10 | at | New Mexico | 2 | Box Score | Recap |
|
| 3/25/2006 |
| Nevada-Las Vegas | 3 | at | San Diego | 10 | Box Score | Recap |
|
| 3/25/2006 |
| Northern Colorado | 11 | at | Brigham Young | 7 | Box Score | Recap |
|
| 3/25/2006 |
| Pacific | 6 | at | San Diego State | 3 | Box Score | Recap |
|
| 3/25/2006 |
| Southern Utah | 0 | at | Air Force | 3 | Box Score | Recap | Pueblo, CO |
| 3/25/2006 |
| Southern Utah | 14 | at | Air Force | 1 | Box Score | Recap | Pueblo, CO |
| 3/25/2006 |
| UCF | 5 | at | Texas Christian | 1 | Box Score | Recap |
|
| 3/25/2006 |
| Utah | 14 | at | St. Mary's | 7 | Box Score | Recap | resumption of suspended game |
| 3/25/2006 |
| Utah | 4 | at | St. Mary's | 5 | Box Score | Recap |
|
| 3/26/2006 |
| Nevada-Las Vegas | 0 | at | San Diego | 3 | Box Score | Recap |
|
| 3/26/2006 |
| Pacific | 10 | at | San Diego State | 4 | Box Score | Recap |
|
| 3/26/2006 |
| UCF | 5 | at | Texas Christian | 3 | Box Score | Recap | 10 innings |
| 3/26/2006 |
| Utah | 10 | at | St. Mary's | 6 | Box Score | Recap |
|
| 3/29/2006 | * | Nevada-Las Vegas | 10 | vs | Brigham Young | 3 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 3/29/2006 | * | New Mexico | 3 | at | San Diego State | 2 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA (10 Innings) |
| 3/30/2006 | * | Brigham Young | 4 | vs | Texas Christian | 9 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 3/30/2006 | * | New Mexico | 4 | vs | Air Force | 6 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 3/30/2006 | * | Utah | 0 | at | San Diego State | 5 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 3/31/2006 | * | Air Force | 6 | vs | Utah | 13 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 3/31/2006 | * | New Mexico | 2 | vs | Brigham Young | 3 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA (12 innings) |
| 3/31/2006 | * | Texas Christian | 5 | vs | Nevada-Las Vegas | 2 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 4/1/2006 | * | Air Force | 7 | vs | Nevada-Las Vegas | 9 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 4/1/2006 | * | Brigham Young | 3 | vs | Utah | 6 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 4/1/2006 | * | Texas Christian | 7 | at | San Diego State | 9 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 4/2/2006 | * | Nevada-Las Vegas | 10 | at | San Diego State | 11 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 4/2/2006 | * | Texas Christian | 12 | vs | Air Force | 6 | Box Score | Recap | MWC Preseason Tournament, San Diego, CA |
| 4/2/2006 | * | Utah |
| vs | New Mexico |
| | Recap | suspended to 4/21, travel arrangements (11-4 Utah, Top 9) (MWC Preseason Tournament, San Diego, CA) |
| 4/3/2006 |
| Southern Utah | 6 | at | Brigham Young | 23 | Box Score | Recap |
|
| 4/4/2006 |
| Air Force | 3 | at | Northern Colorado | 1 | Box Score | Recap |
|
| 4/4/2006 |
| Baylor | 8 | at | Texas Christian | 18 | Box Score | Recap |
|
| 4/4/2006 |
| Cal State Fullerton |
| at | San Diego State |
| | Recap | PPD, rain |
| 4/4/2006 |
| UC Riverside | 8 | at | Nevada-Las Vegas | 14 | Box Score | Recap |
|
| 4/4/2006 |
| Utah Valley State | 6 | at | Utah | 11 | Box Score | Recap |
|
| 4/6/2006 | * | Brigham Young | 9 | at | Nevada-Las Vegas | 5 | Box Score | Recap |
|
| 4/6/2006 |
| Utah |
| at | Utah Valley State |
| | Recap | PPD to 4/7, rain |
| 4/7/2006 | * | Air Force | 1 | at | Texas Christian | 16 | Box Score | Recap |
|
| 4/7/2006 | * | Brigham Young | 14 | at | Nevada-Las Vegas | 8 | Box Score | Recap |
|
| 4/7/2006 | * | New Mexico | 4 | at | San Diego State | 10 | Box Score | Recap |
|
| 4/7/2006 |
| Utah | 18 | at | Utah Valley State | 5 | Box Score | Recap | makeup of 4/6 game |
| 4/7/2006 |
| Utah | 12 | at | Utah Valley State | 6 | Box Score | Recap |
|
| 4/8/2006 | * | Air Force | 2 | at | Texas Christian | 13 | Box Score | Recap |
|
| 4/8/2006 | * | Brigham Young | 8 | at | Nevada-Las Vegas | 18 | Box Score | Recap |
|
| 4/8/2006 | * | New Mexico | 8 | at | San Diego State | 2 | Box Score | Recap |
|
| 4/8/2006 |
| Utah | 4 | at | Utah Valley State | 5 | Box Score | Recap |
|
| 4/9/2006 | * | Air Force | 4 | at | Texas Christian | 5 | Box Score | Recap |
|
| 4/9/2006 | * | New Mexico | 15 | at | San Diego State | 7 | Box Score | Recap |
|
| 4/11/2006 |
| Brigham Young | 8 | at | Utah Valley State | 6 | Box Score | Recap |
|
| 4/11/2006 |
| Long Beach State | 3 | at | San Diego State | 4 | Box Score | Recap |
|
| 4/11/2006 |
| New Mexico | 7 | at | Texas Tech | 14 | Box Score | Recap |
|
| 4/11/2006 |
| Northern Colorado | 15 | at | Air Force | 5 | Box Score | Recap |
|
| 4/11/2006 |
| Southern Utah | 3 | at | Utah | 7 | Box Score | Recap |
|
| 4/11/2006 |
| Texas Christian | 11 | at | Oklahoma | 12 | Box Score | Recap |
|
| 4/13/2006 | * | Air Force | 11 | at | New Mexico | 23 | Box Score | Recap |
|
| 4/13/2006 | * | Air Force | 3 | at | New Mexico | 24 | Box Score | Recap |
|
| 4/13/2006 |
| Brigham Young | 1 | at | Washington | 10 | Box Score | Recap |
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| 4/13/2006 | * | Utah | 6 | at | San Diego State | 7 | Box Score | Recap |
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| 4/14/2006 | * | Air Force | 11 | at | New Mexico | 26 | Box Score | Recap |
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| 4/14/2006 |
| Brigham Young | 4 | at | Washington | 2 | Box Score | Recap |
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| 4/14/2006 | * | Nevada-Las Vegas | 3 | at | Texas Christian | 7 | Box Score | Recap |
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| 4/14/2006 | * | Utah | 20 | at | San Diego State | 7 | Box Score | Recap |
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| 4/15/2006 |
| Brigham Young | 1 | at | Washington | 12 | Box Score | Recap |
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| 4/15/2006 | * | Nevada-Las Vegas | 7 | at | Texas Christian | 9 | Box Score | Recap |
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| 4/15/2006 | * | Utah | 3 | at | San Diego State | 9 | Box Score | Recap |
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| 4/16/2006 | * | Nevada-Las Vegas | 2 | at | Texas Christian | 3 | Box Score | Recap |
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| 4/18/2006 |
| Arizona | 3 | at | New Mexico | 13 | Box Score | Recap |
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| 4/18/2006 |
| Southern Utah |
| at | Utah |
| | Recap | PPD to 4/19, snow |
| 4/18/2006 |
| Utah Valley State | 6 | at | Brigham Young | 11 | Box Score | Recap |
|
| 4/19/2006 |
| Southern Utah | 5 | at | Utah | 10 | Box Score | Recap | makeup of 4/18 game |
| 4/20/2006 | * | Texas Christian | 6 | at | Brigham Young | 4 | Box Score | Recap |
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| 4/21/2006 | * | San Diego State | 5 | at | Nevada-Las Vegas | 6 | Box Score | Recap | 12 innings |
| 4/21/2006 | * | Texas Christian | 14 | at | Brigham Young | 5 | Box Score | Recap |
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| 4/21/2006 | * | Utah | 5 | at | New Mexico | 8 | Box Score | Recap |
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| 4/22/2006 | * | San Diego State | 8 | at | Nevada-Las Vegas | 6 | Box Score | Recap |
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| 4/22/2006 | * | Texas Christian | 4 | at | Brigham Young | 6 | Box Score | Recap |
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| 4/22/2006 | * | Utah | 11 | vs | New Mexico | 4 | Box Score | Recap | resumption of suspended game |
| 4/22/2006 | * | Utah | 8 | at | New Mexico | 17 | Box Score | Recap |
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| 4/23/2006 | * | San Diego State | 16 | at | Nevada-Las Vegas | 8 | Box Score | Recap |
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| 4/23/2006 | * | Utah | 8 | at | New Mexico | 9 | Box Score | Recap |
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| 4/24/2006 |
| New Mexico | 9 | at | Oklahoma | 18 | Box Score | Recap |
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| 4/25/2006 |
| Brigham Young | 7 | at | Northern Colorado | 6 | Box Score | Recap |
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| 4/25/2006 |
| Nevada-Las Vegas | 4 | at | UC Riverside | 6 | Box Score | Recap |
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| 4/25/2006 |
| New Mexico | 4 | at | Texas Tech | 6 | Box Score | Recap |
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| 4/25/2006 |
| San Diego State | 4 | at | Long Beach State | 16 | Box Score | Recap |
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| 4/25/2006 |
| Texas Christian | 16 | at | Texas-Arlington | 6 | Box Score | Recap |
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| 4/25/2006 |
| Utah Valley State | 1 | at | Utah | 14 | Box Score | Recap |
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| 4/26/2006 |
| Brigham Young | 8 | at | |