| Game Date | Conference | Road Team | Score |
| Home Team | Score | Box Score | Recap | Commentary |
| 2/3/2006 |
| Arkansas-Little Rock |
| at | Stephen F. Austin |
| | Recap | PPD to 2/4, field conditions |
| 2/3/2006 |
| Lamar | 6 | vs | Gonzaga | 7 | Box Score | Recap | UTPA Classic, Edinburg, TX |
| 2/3/2006 |
| Louisiana-Monroe | 5 | at | Texas Tech | 21 | Box Score | Recap |
|
| 2/3/2006 |
| McNeese State | 6 | at | Louisiana Tech | 4 | Box Score | Recap |
|
| 2/3/2006 |
| Texas State | 6 | vs | Oklahoma | 7 | Box Score | Recap | UTPA Classic, Edinburg, TX |
| 2/4/2006 |
| Arkansas-Little Rock | 5 | at | Stephen F. Austin | 6 | Box Score | Recap | makeup of 2/3 game |
| 2/4/2006 |
| Arkansas-Little Rock |
| at | Stephen F. Austin |
| | Recap | suspended to 2/5, darkness (9-7 UALR, Top 8) |
| 2/4/2006 |
| Gonzaga | 8 | vs | Texas State | 4 | Box Score | Recap | UTPA Classic, Edinburg, TX |
| 2/4/2006 |
| Lamar | 7 | vs | Northern Colorado | 11 | Box Score | Recap | UTPA Classic, Edinburg, TX |
| 2/4/2006 |
| Louisiana-Monroe | 4 | at | Texas Tech | 15 | Box Score | Recap |
|
| 2/4/2006 |
| McNeese State | 10 | at | Louisiana Tech | 5 | Box Score | Recap |
|
| 2/5/2006 |
| Arkansas-Little Rock | 10 | at | Stephen F. Austin | 7 | Box Score | Recap | resumption of suspended game |
| 2/5/2006 |
| Arkansas-Little Rock | 2 | at | Stephen F. Austin | 3 | Box Score | Recap | 12 innings |
| 2/5/2006 |
| Louisiana-Monroe | 10 | at | Texas Tech | 11 | Box Score | Recap | 1,428th win for Larry Hays (TT), 3rd all-time |
| 2/5/2006 |
| McNeese State | 3 | at | Louisiana Tech | 5 | Box Score | Recap |
|
| 2/5/2006 |
| Oklahoma | 9 | vs | Lamar | 21 | Box Score | Recap | UTPA Classic, Edinburg, TX |
| 2/5/2006 |
| Texas State | 5 | at | Texas-Pan American | 6 | Box Score | Recap | UTPA Classic, Edinburg, TX |
| 2/7/2006 |
| McNeese State | 2 | at | Rice | 6 | Box Score | Recap | Aaron Luna (Rice) hits HRs in first 3 college at bats |
| 2/7/2006 |
| New Orleans | 3 | at | Nicholls State | 4 | Box Score | Recap |
|
| 2/7/2006 |
| Texas-San Antonio | 10 | at | Houston | 11 | Box Score | Recap | UH: 3 runs w/ 2 outs to tie in 9th, 4 runs w/ 2 outs to win in 10th (10 innings) |
| 2/10/2006 |
| Louisiana-Monroe |
| at | Arkansas State |
| | Recap | CCD, inclement weather |
| 2/10/2006 |
| New Mexico | 0 | at | Texas State | 2 | Box Score | Recap |
|
| 2/10/2006 |
| Northwestern State | 4 | at | Texas A&M | 10 | Box Score | Recap | A&M ties school record 10 SB |
| 2/10/2006 |
| Southeastern Louisiana | 1 | at | Stetson | 2 | Box Score | Recap |
|
| 2/10/2006 |
| Stephen F. Austin |
| at | Baylor |
| | Recap | PPD to 2/12, rain |
| 2/10/2006 |
| Texas Southern |
| at | Sam Houston State |
| | Recap | PPD to 2/12, rain |
| 2/10/2006 |
| Texas-Arlington |
| at | Louisiana Tech |
| | Recap | PPD to 2/12, rain |
| 2/10/2006 |
| Texas-Pan American |
| at | Lamar |
| | Recap | PPD to 2/13, rain |
| 2/10/2006 |
| Utah | 4 | at | Texas-San Antonio | 5 | Box Score | Recap |
|
| 2/11/2006 |
| Arkansas-Monticello | 11 | at | Nicholls State | 3 | Box Score | Recap |
|
| 2/11/2006 |
| Louisiana-Monroe |
| at | Arkansas State |
| | Recap | CCD, inclement weather |
| 2/11/2006 |
| New Mexico | 7 | at | Texas State | 3 | Box Score | Recap | 10 innings |
| 2/11/2006 |
| Northwestern State | 3 | at | Texas A&M | 4 | Box Score | Recap | 13 innings |
| 2/11/2006 |
| Southeastern Louisiana | 5 | at | Stetson | 4 | Box Score | Recap |
|
| 2/11/2006 |
| Stephen F. Austin | 2 | at | Baylor | 9 | Box Score | Recap |
|
| 2/11/2006 |
| Texas Southern | 3 | at | Sam Houston State | 16 | Box Score | Recap |
|
| 2/11/2006 |
| Texas-Arlington | 7 | at | Louisiana Tech | 2 | Box Score | Recap |
|
| 2/11/2006 |
| Texas-Pan American | 1 | at | Lamar | 6 | Box Score | Recap |
|
| 2/11/2006 |
| Utah | 10 | at | Texas-San Antonio | 1 | Box Score | Recap |
|
| 2/12/2006 |
| Arkansas-Monticello | 6 | at | Nicholls State | 4 | Box Score | Recap |
|
| 2/12/2006 |
| Louisiana-Monroe |
| at | Arkansas State |
| | Recap | CCD, inclement weather |
| 2/12/2006 |
| New Mexico | 3 | at | Texas State | 2 | Box Score | Recap | 10 innings |
| 2/12/2006 |
| Northwestern State | 1 | at | Texas A&M | 2 | Box Score | Recap |
|
| 2/12/2006 |
| Southeastern Louisiana | 6 | at | Stetson | 4 | Box Score | Recap |
|
| 2/12/2006 |
| Stephen F. Austin | 3 | at | Baylor | 8 | Box Score | Recap | makeup of 2/10 game |
| 2/12/2006 |
| Stephen F. Austin | 1 | at | Baylor | 3 | Box Score | Recap |
|
| 2/12/2006 |
| Texas Southern | 3 | at | Sam Houston State | 14 | Box Score | Recap |
|
| 2/12/2006 |
| Texas Southern | 3 | at | Sam Houston State | 12 | Box Score | Recap |
|
| 2/12/2006 |
| Texas-Arlington | 10 | at | Louisiana Tech | 4 | Box Score | Recap | makeup of 2/10 game |
| 2/12/2006 |
| Texas-Arlington | 4 | at | Louisiana Tech | 5 | Box Score | Recap |
|
| 2/12/2006 |
| Texas-Pan American | 0 | at | Lamar | 10 | Box Score | Recap |
|
| 2/12/2006 |
| Utah | 6 | at | Texas-San Antonio | 9 | Box Score | Recap |
|
| 2/13/2006 |
| Texas-Pan American | 3 | at | Lamar | 11 | Box Score | Recap | makeup of 2/10 game |
| 2/14/2006 |
| Louisiana-Monroe | 2 | at | Louisiana-Lafayette | 8 | Box Score | Recap |
|
| 2/14/2006 |
| McNeese State | 3 | at | Tulane | 5 | Box Score | Recap |
|
| 2/14/2006 |
| Stephen F. Austin | 1 | at | Houston | 8 | Box Score | Recap |
|
| 2/14/2006 |
| Texas A&M | 7 | at | Sam Houston State | 4 | Box Score | Recap |
|
| 2/14/2006 |
| Texas State | 5 | at | Texas Christian | 1 | Box Score | Recap |
|
| 2/14/2006 |
| Texas-Arlington | 4 | at | Baylor | 17 | Box Score | Recap |
|
| 2/14/2006 |
| Texas-San Antonio | 1 | at | Texas | 6 | Box Score | Recap |
|
| 2/15/2006 |
| Grambling State | 2 | at | Northwestern State | 9 | Box Score | Recap |
|
| 2/15/2006 |
| Nicholls State | 2 | at | Southern Mississippi | 5 | Box Score | Recap |
|
| 2/16/2006 |
| Dallas Baptist | 5 | at | Sam Houston State | 4 | Box Score | | CW Lighting Invitational, Huntsville, TX (12 innings) |
| 2/16/2006 |
| Kansas State | 13 | at | Texas-Arlington | 3 | Box Score | Recap | UTA Invitational, Arlington, TX |
| 2/17/2006 |
| Jacksonville State | 1 | at | Southeastern Louisiana | 5 | Box Score | Recap |
|
| 2/17/2006 |
| Kentucky | 10 | at | Texas-San Antonio | 4 | Box Score | Recap |
|
| 2/17/2006 |
| Lamar | 6 | vs | Long Beach State | 11 | Box Score | Recap | Coca-Cola Classic, Houston, TX |
| 2/17/2006 |
| Missouri | 5 | at | Louisiana-Monroe | 1 | Box Score | Recap |
|
| 2/17/2006 |
| Missouri | 11 | at | Louisiana-Monroe | 0 | Box Score | Recap | moved from 2/19, impending weather |
| 2/17/2006 |
| Oral Roberts | 5 | at | Texas-Arlington | 7 | Box Score | Recap | UTA Invitational, Arlington, TX |
| 2/17/2006 |
| Prairie View A&M |
| at | Texas State |
| | Recap | PPD to 2/19, inclement weather |
| 2/17/2006 |
| Southeast Missouri State | 8 | at | McNeese State | 1 | Box Score | Recap |
|
| 2/17/2006 |
| Southern | 4 | at | Nicholls State | 6 | Box Score | Recap |
|
| 2/17/2006 |
| Stephen F. Austin | 3 | at | Texas-Pan American | 10 | Box Score | Recap | Al Ogletree Classic, Edinburg, TX |
| 2/17/2006 |
| Tennessee-Martin | 1 | at | Northwestern State | 9 | Box Score | Recap |
|
| 2/17/2006 |
| Tennessee-Martin | 1 | at | Northwestern State | 7 | Box Score | Recap | moved from 2/19, impending weather |
| 2/17/2006 |
| Texas A&M-Corpus Christi |
| at | Sam Houston State |
| | | suspended to 2/18, rain (1-1, 6th) (CW Lighting Invitational, Huntsville, TX) |
| 2/18/2006 |
| Arkansas | 15 | vs | Stephen F. Austin | 7 | Box Score | Recap | Al Ogletree Classic, Edinburg, TX |
| 2/18/2006 |
| Army |
| at | Texas-San Antonio |
| | Recap | CCD, inclement weather |
| 2/18/2006 |
| Illinois State |
| at | Texas-Arlington |
| | Recap | CCD, travel problems (UTA Invitational, Arlington, TX) |
| 2/18/2006 |
| Jacksonville State |
| at | Southeastern Louisiana |
| | Recap | PPD to 2/19, rain |
| 2/18/2006 |
| Missouri |
| at | Louisiana-Monroe |
| | Recap | CCD, inclement weather |
| 2/18/2006 |
| Nicholls State |
| at | Southern |
| | Recap | PPD, inclement weather |
| 2/18/2006 |
| Oklahoma | 11 | vs | Lamar | 4 | Box Score | Recap | Coca-Cola Classic, Houston, TX |
| 2/18/2006 |
| Prairie View A&M |
| at | Texas State |
| | Recap | PPD to 2/19, inclement weather |
| 2/18/2006 |
| Southeast Missouri State | 6 | at | McNeese State | 7 | Box Score | Recap |
|
| 2/18/2006 |
| Southern Illinois |
| at | Sam Houston State |
| | Recap | CCD, rain (CW Lighting Invitational, Huntsville, TX) |
| 2/18/2006 |
| Tennessee-Martin |
| at | Northwestern State |
| | Recap | PPD to 2/19, inclement weather |
| 2/19/2006 |
| Army | 4 | at | Texas-San Antonio | 5 | Box Score | Recap |
|
| 2/19/2006 |
| Jacksonville State | 5 | at | Southeastern Louisiana | 6 | Box Score | Recap |
|
| 2/19/2006 |
| Jacksonville State | 14 | at | Southeastern Louisiana | 2 | Box Score | Recap | makeup of 2/18 game |
| 2/19/2006 |
| Kentucky |
| at | Texas-San Antonio |
| | Recap | CCD, inclement weather |
| 2/19/2006 |
| Lamar | 1 | at | Rice | 7 | Box Score | Recap | Coca-Cola Classic, Houston, TX |
| 2/19/2006 |
| Prairie View A&M | 1 | at | Texas State | 7 | Box Score | Recap | makuep of 2/17 game |
| 2/19/2006 |
| Prairie View A&M |
| at | Texas State |
| | Recap | CCD, cold (makeup of 2/18 game) |
| 2/19/2006 |
| Southeast Missouri State | 0 | at | McNeese State | 10 | Box Score | Recap |
|
| 2/19/2006 |
| Southern | 2 | at | Nicholls State | 3 | Box Score | Recap |
|
| 2/19/2006 |
| Stephen F. Austin | 0 | vs | Texas Christian | 13 | Box Score | Recap | No-hitter for Brad Furnish (Al Ogletree Classic, Edinburg, TX) |
| 2/19/2006 |
| Tennessee-Martin | 2 | at | Northwestern State | 7 | Box Score | Recap | makeup of 2/18 game |
| 2/19/2006 |
| Texas A&M-Corpus Christi | 2 | at | Sam Houston State | 3 | Box Score | Recap | resumption of suspended game (12 innings) |
| 2/21/2006 |
| Centenary | 3 | at | Northwestern State | 6 | Box Score | Recap |
|
| 2/21/2006 |
| Henderson State | 5 | at | Louisiana-Monroe | 4 | Box Score | Recap |
|
| 2/21/2006 |
| McNeese State |
| at | Louisiana-Lafayette |
| | Recap | PPD to 3/1, rain |
| 2/21/2006 |
| Nicholls State | 5 | at | Southern | 8 | Box Score | Recap | makeup of 2/18 game |
| 2/21/2006 |
| Sam Houston State | 3 | at | Rice | 9 | Box Score | Recap |
|
| 2/21/2006 |
| Southeastern Louisiana | 3 | at | Louisiana State | 7 | Box Score | Recap |
|
| 2/21/2006 |
| Stephen F. Austin | 4 | at | Dallas Baptist | 7 | Box Score | Recap | moved from SFA, field conditions |
| 2/21/2006 |
| Texas A&M | 14 | at | Texas-Arlington | 3 | Box Score | Recap |
|
| 2/21/2006 |
| Texas-San Antonio | 0 | at | Baylor | 5 | Box Score | Recap | 5 innings (fog) |
| 2/22/2006 |
| Northwestern State | 3 | at | Houston | 12 | Box Score | Recap |
|
| 2/22/2006 |
| Texas State | 4 | at | Texas | 7 | Box Score | Recap |
|
| 2/23/2006 |
| Oral Roberts |
| vs | Texas-Arlington |
| | Recap | PPD to 2/24, rain (Midland Collegiate Classic, Midland, TX) |
| 2/24/2006 |
| Louisiana-Monroe | 5 | vs | Kansas State | 10 | Box Score | Recap | Mardi Gras Ball Tournament, Lafayette, LA |
| 2/24/2006 |
| Michigan State | 1 | at | Lamar | 8 | Box Score | Recap | Cardinal Classic, Beaumont, TX |
| 2/24/2006 |
| Nicholls State | 1 | at | Wichita State | 18 | Box Score | Recap |
|
| 2/24/2006 |
| Siena | 0 | at | McNeese State | 3 | Box Score | Recap |
|
| 2/24/2006 |
| Southeastern Louisiana | 14 | at | Southern | 3 | Box Score | |
|
| 2/24/2006 |
| Stephen F. Austin | 6 | at | Arkansas-Little Rock | 5 | Box Score | Recap |
|
| 2/24/2006 |
| Texas State | 3 | vs | Nebraska | 10 | Box Score | Recap | Rice Invitational, Houston, TX |
| 2/24/2006 |
| Texas-Arlington | 7 | vs | Oral Roberts | 8 | Box Score | Recap | makeup of 2/23 game (Midland Collegiate Classic, Midland, TX) (11 innings) |
| 2/24/2006 |
| Texas-Arlington | 7 | vs | Texas Tech | 15 | Box Score | Recap | Midland Collegiate Classic, Midland, TX |
| 2/24/2006 |
| Texas-Pan American | 3 | at | Sam Houston State | 5 | Box Score | Recap |
|
| 2/25/2006 |
| Dallas Baptist | 9 | vs | Texas-Arlington | 1 | Box Score | Recap | Midland Collegiate Classic, Midland, TX |
| 2/25/2006 |
| Kentucky | 6 | at | Lamar | 1 | Box Score | Recap | Cardinal Classic, Beaumont, TX |
| 2/25/2006 |
| Louisiana-Monroe |
| vs | Purdue |
| | Recap | CCD, rain (Mardi Gras Ball Tournament, Lafayette, LA) |
| 2/25/2006 |
| Michigan State |
| at | Lamar |
| | Recap | CCD, rain (Cardinal Classic, Beaumont, TX) |
| 2/25/2006 |
| Nicholls State | 3 | at | Wichita State | 4 | Box Score | Recap |
|
| 2/25/2006 |
| Oakland |
| at | Northwestern State |
| | Recap | PPD to 2/26, rain |
| 2/25/2006 |
| Siena | 4 | at | McNeese State | 6 | Box Score | Recap |
|
| 2/25/2006 |
| Southern |
| at | Southeastern Louisiana |
| | | PPD to 5/3, rain |
| 2/25/2006 |
| St. John's | 10 | vs | Texas State | 5 | Box Score | Recap | Rice Invitational, Houston, TX |
| 2/25/2006 |
| Stephen F. Austin | 7 | at | Arkansas-Little Rock | 8 | Box Score | Recap |
|
| 2/25/2006 |
| Texas-Pan American |
| at | Sam Houston State |
| | | PPD to 2/26, rain |
| 2/25/2006 |
| Texas-San Antonio | 9 | at | Texas A&M-Corpus Christi | 5 | Box Score | Recap |
|
| 2/25/2006 |
| Texas-San Antonio | 4 | at | Texas A&M-Corpus Christi | 6 | Box Score | Recap |
|
| 2/26/2006 |
| Arkansas State | 8 | at | Lamar | 11 | Box Score | Recap | Cardinal Classic, Beaumont, TX |
| 2/26/2006 |
| Louisiana-Monroe | 8 | at | Louisiana-Lafayette | 12 | Box Score | Recap | 400th win at ULL for Tony Robichaux (Mardi Gras Ball Tournament, Lafayette, LA) |
| 2/26/2006 |
| Nicholls State | 5 | at | Wichita State | 9 | Box Score | Recap |
|
| 2/26/2006 |
| Oakland | 3 | at | Northwestern State | 4 | Box Score | Recap |
|
| 2/26/2006 |
| Oakland | 5 | at | Northwestern State | 15 | Box Score | Recap |
|
| 2/26/2006 |
| Siena | 1 | at | McNeese State | 5 | Box Score | Recap |
|
| 2/26/2006 |
| Southeastern Louisiana | 17 | at | Southern | 5 | Box Score | |
|
| 2/26/2006 |
| Stephen F. Austin | 8 | at | Arkansas-Little Rock | 9 | Box Score | Recap |
|
| 2/26/2006 |
| Texas State | 2 | at | Rice | 3 | Box Score | Recap | Rice Invitational, Houston, TX |
| 2/26/2006 |
| Texas-Pan American | 5 | at | Sam Houston State | 2 | Box Score | Recap | makeup of 2/25 game |
| 2/26/2006 |
| Texas-Pan American | 5 | at | Sam Houston State | 2 | Box Score | Recap |
|
| 2/26/2006 |
| Texas-San Antonio | 4 | at | Texas A&M-Corpus Christi | 6 | Box Score | Recap |
|
| 2/28/2006 |
| Baylor | 4 | at | Texas State | 3 | Box Score | Recap |
|
| 2/28/2006 |
| Centenary | 2 | at | Sam Houston State | 3 | Box Score | Recap |
|
| 2/28/2006 |
| Houston | 4 | at | Lamar | 5 | Box Score | Recap |
|
| 2/28/2006 |
| Louisiana-Lafayette | 10 | at | Nicholls State | 2 | Box Score | Recap |
|
| 2/28/2006 |
| Northwestern State | 10 | at | Arkansas-Little Rock | 13 | Box Score | Recap |
|
| 2/28/2006 |
| Texas-Arlington |
| at | Hawaii |
| | Recap | PPD to 3/1, rain (Rainbow Baseball Tournament, Honolulu, HI) |
| 3/1/2006 |
| Louisiana-Monroe | 5 | at | Louisiana State | 8 | Box Score | Recap |
|
| 3/1/2006 |
| McNeese State | 2 | at | Louisiana-Lafayette | 3 | Box Score | Recap |
|
| 3/1/2006 |
| Southern Mississippi | 8 | at | Southeastern Louisiana | 7 | Box Score | Recap |
|
| 3/1/2006 |
| Texas-Arlington | 4 | vs | Arkansas | 12 | Box Score | Recap | Rainbow Baseball Tournament, Honolulu, HI |
| 3/1/2006 |
| Texas-Arlington | 15 | at | Hawaii | 9 | Box Score | Recap | makeup of 2/28 game (Rainbow Baseball Tournament, Honolulu, HI) |
| 3/2/2006 |
| Texas-San Antonio | 8 | at | Dallas Baptist | 2 | Box Score | Recap |
|
| 3/2/2006 |
| Washington | 6 | vs | Texas-Arlington | 5 | Box Score | Recap | Rainbow Baseball Tournament, Honolulu, HI |
| 3/3/2006 |
| Iona | 0 | at | Lamar | 23 | Box Score | Recap | Lamar Classic, Beaumont, TX |
| 3/3/2006 |
| Iowa | 2 | vs | Northwestern State | 0 | Box Score | Recap | Louisiana-Lafayette Invitational, Lafayette, LA |
| 3/3/2006 |
| Louisiana-Monroe | 2 | at | Jacksonville State | 8 | Box Score | Recap |
|
| 3/3/2006 |
| Memphis | 8 | at | Nicholls State | 7 | Box Score | Recap |
|
| 3/3/2006 |
| Sam Houston State | 4 | at | Texas-Pan American | 5 | Box Score | Recap | 10 innings |
| 3/3/2006 |
| Southeastern Louisiana | 8 | at | Southeast Missouri State | 0 | Box Score | Recap | Southeast Missouri Tournament, Cape Girardeau, MO |
| 3/3/2006 | * | Texas State | 3 | at | Stephen F. Austin | 5 | Box Score | Recap |
|
| 3/3/2006 |
| Texas-Arlington | 3 | vs | Arkansas | 5 | Box Score | Recap | Rainbow Baseball Tournament, Honolulu, HI |
| 3/3/2006 |
| Texas-San Antonio | 7 | at | Dallas Baptist | 0 | Box Score | Recap |
|
| 3/4/2006 |
| Arkansas | 7 | vs | Texas-Arlington | 1 | Box Score | Recap | Rainbow Baseball Tournament, Honolulu, HI |
| 3/4/2006 |
| Connecticut | 0 | at | Lamar | 4 | Box Score | Recap | Lamar Classic, Beaumont, TX |
| 3/4/2006 |
| Creighton | 8 | vs | Southeastern Louisiana | 2 | Box Score | Recap | Southeast Missouri Tournament, Cape Girardeau, MO |
| 3/4/2006 |
| Louisiana-Monroe | 5 | at | Jacksonville State | 6 | Box Score | Recap |
|
| 3/4/2006 |
| Memphis | 4 | at | Nicholls State | 6 | Box Score | Recap |
|
| 3/4/2006 |
| Northwestern State | 5 | vs | Evansville | 3 | Box Score | Recap | Louisiana-Lafayette Invitational, Lafayette, LA |
| 3/4/2006 |
| Sam Houston State | 5 | at | Texas-Pan American | 8 | Box Score | Recap |
|
| 3/4/2006 | * | Texas State | 7 | at | Stephen F. Austin | 3 | Box Score | Recap |
|
| 3/4/2006 |
| Texas-San Antonio | 8 | at | Dallas Baptist | 4 | Box Score | Recap |
|
| 3/5/2006 |
| Indiana State | 10 | vs | Southeastern Louisiana | 6 | Box Score | Recap | Southeast Missouri Tournament, Cape Girardeau, MO (11 innings) |
| 3/5/2006 |
| Louisiana-Monroe | 6 | at | Jacksonville State | 7 | Box Score | Recap |
|
| 3/5/2006 |
| Memphis | 17 | at | Nicholls State | 4 | Box Score | Recap |
|
| 3/5/2006 |
| New Orleans | 1 | at | Lamar | 2 | Box Score | Recap | Lamar Classic, Beaumont, TX (10 innings) |
| 3/5/2006 |
| Northwestern State | 2 | at | Louisiana-Lafayette | 0 | Box Score | Recap | Louisiana-Lafayette Invitational, Lafayette, LA |
| 3/5/2006 |
| Sam Houston State | 18 | at | Texas-Pan American | 7 | Box Score | Recap |
|
| 3/5/2006 | * | Texas State | 7 | at | Stephen F. Austin | 3 | Box Score | Recap |
|
| 3/7/2006 |
| Baylor | 9 | at | Texas-Arlington | 4 | Box Score | Recap |
|
| 3/7/2006 |
| Lamar | 3 | at | Houston | 4 | Box Score | Recap |
|
| 3/7/2006 |
| Louisiana-Monroe | 5 | at | Southern Mississippi | 18 | Box Score | Recap |
|
| 3/7/2006 |
| Nicholls State | 0 | at | Louisiana-Lafayette | 8 | Box Score | Recap |
|
| 3/7/2006 |
| Northwestern State | 10 | at | Louisiana College | 7 | Box Score | Recap |
|
| 3/7/2006 |
| Texas A&M | 4 | vs | Texas State | 6 | Box Score | Recap | Round Rock, TX |
| 3/7/2006 |
| Texas-Pan American | 9 | at | Texas-San Antonio | 10 | Box Score | Recap | 10 innings |
| 3/8/2006 |
| Dallas Baptist | 3 | at | McNeese State | 4 | Box Score | Recap |
|
| 3/8/2006 |
| Dallas Baptist | 11 | at | McNeese State | 8 | Box Score | Recap |
|
| 3/8/2006 |
| Louisiana-Monroe | 2 | at | Mississippi State | 7 | Box Score | Recap |
|
| 3/8/2006 |
| North Carolina-Asheville | 4 | at | Texas-Arlington | 3 | Box Score | Recap |
|
| 3/10/2006 |
| Iowa | 1 | at | Texas-San Antonio | 3 | Box Score | Recap | Baseball Express Collegiate Baseball Classic, San Antonio, TX |
| 3/10/2006 | * | Lamar | 0 | at | Southeastern Louisiana | 4 | Box Score | Recap |
|
| 3/10/2006 | * | McNeese State | 3 | at | Sam Houston State | 7 | Box Score | Recap |
|
| 3/10/2006 | * | Northwestern State | 9 | at | Texas-Arlington | 10 | Box Score | Recap |
|
| 3/10/2006 | * | Stephen F. Austin | 3 | at | Louisiana-Monroe | 4 | Box Score | Recap |
|
| 3/10/2006 | * | Texas State | 3 | at | Nicholls State | 1 | Box Score | Recap |
|
| 3/11/2006 |
| Illinois | 3 | at | Texas-San Antonio | 9 | Box Score | Recap | Baseball Express Collegiate Baseball Classic, San Antonio, TX |
| 3/11/2006 | * | Lamar | 6 | at | Southeastern Louisiana | 1 | Box Score | Recap |
|
| 3/11/2006 | * | McNeese State | 4 | at | Sam Houston State | 7 | Box Score | Recap |
|
| 3/11/2006 | * | Northwestern State | 1 | at | Texas-Arlington | 14 | Box Score | Recap |
|
| 3/11/2006 | * | Stephen F. Austin | 15 | at | Louisiana-Monroe | 16 | Box Score | Recap |
|
| 3/11/2006 | * | Texas State | 6 | at | Nicholls State | 1 | Box Score | Recap |
|
| 3/12/2006 | * | Lamar | 5 | at | Southeastern Louisiana | 1 | Box Score | Recap |
|
| 3/12/2006 | * | McNeese State | 8 | at | Sam Houston State | 5 | Box Score | Recap |
|
| 3/12/2006 | * | Northwestern State | 1 | at | Texas-Arlington | 6 | Box Score | Recap |
|
| 3/12/2006 | * | Stephen F. Austin | 7 | at | Louisiana-Monroe | 16 | Box Score | Recap |
|
| 3/12/2006 |
| Texas A&M | 2 | at | Texas-San Antonio | 4 | Box Score | Recap | Baseball Express Collegiate Baseball Classic, San Antonio, TX |
| 3/12/2006 | * | Texas State | 6 | at | Nicholls State | 0 | Box Score | Recap |
|
| 3/13/2006 |
| Louisiana-Lafayette | 2 | at | Texas-San Antonio | 5 | Box Score | Recap | Baseball Express Collegiate Baseball Classic, San Antonio, TX (12 innings) |
| 3/14/2006 |
| Dallas Baptist | 15 | at | Stephen F. Austin | 5 | Box Score | Recap |
|
| 3/14/2006 |
| Lamar | 5 | at | Louisiana Tech | 14 | Box Score | Recap |
|
| 3/14/2006 |
| Lamar | 9 | at | Louisiana Tech | 4 | Box Score | Recap |
|
| 3/14/2006 |
| Nicholls State | 7 | at | Tulane | 4 | Box Score | Recap |
|
| 3/14/2006 |
| Northwestern State | 11 | at | Grambling State | 2 | Box Score | Recap |
|
| 3/14/2006 |
| Oklahoma | 8 | at | Texas-Arlington | 0 | Box Score | Recap |
|
| 3/14/2006 |
| Texas Christian | 3 | at | Texas State | 1 | Box Score | Recap |
|
| 3/15/2006 |
| Buffalo | 3 | at | Southeastern Louisiana | 5 | Box Score | |
|
| 3/15/2006 |
| Louisiana-Lafayette | 4 | at | McNeese State | 5 | Box Score | Recap |
|
| 3/15/2006 |
| Rice | 8 | at | Sam Houston State | 9 | Box Score | Recap |
|
| 3/17/2006 | * | Nicholls State | 7 | at | Stephen F. Austin | 3 | Box Score | Recap |
|
| 3/17/2006 |
| Prairie View A&M | 7 | at | McNeese State | 21 | Box Score | Recap |
|
| 3/17/2006 | * | Sam Houston State | 2 | at | Northwestern State | 5 | Box Score | Recap |
|
| 3/17/2006 | * | Southeastern Louisiana | 6 | at | Texas State | 4 | Box Score | Recap |
|
| 3/17/2006 | * | Texas-Arlington | 10 | at | Louisiana-Monroe | 4 | Box Score | Recap |
|
| 3/17/2006 | * | Texas-San Antonio | 3 | at | Lamar | 13 | Box Score | Recap |
|
| 3/18/2006 | * | Nicholls State | 2 | at | Stephen F. Austin | 3 | Box Score | Recap | 10 innings |
| 3/18/2006 | * | Nicholls State | 9 | at | Stephen F. Austin | 2 | Box Score | Recap | moved from 3/19, impending weather |
| 3/18/2006 |
| Prairie View A&M | 3 | at | McNeese State | 12 | Box Score | Recap |
|
| 3/18/2006 |
| Prairie View A&M | 0 | at | McNeese State | 5 | Box Score | Recap |
|
| 3/18/2006 | * | Sam Houston State | 9 | at | Northwestern State | 6 | Box Score | Recap |
|
| 3/18/2006 | * | Sam Houston State | 7 | at | Northwestern State | 3 | Box Score | Recap | moved from 3/19, impending weather |
| 3/18/2006 | * | Southeastern Louisiana | 2 | at | Texas State | 13 | Box Score | Recap |
|
| 3/18/2006 | * | Texas-Arlington |
| at | Louisiana-Monroe |
| | Recap | PPD to 3/19, rain |
| 3/18/2006 | * | Texas-Arlington |
| at | Louisiana-Monroe |
| | Recap | PPD to 3/19, rain |
| 3/18/2006 | * | Texas-San Antonio | 3 | at | Lamar | 0 | Box Score | Recap |
|
| 3/19/2006 | * | Southeastern Louisiana | 10 | at | Texas State | 11 | Box Score | Recap | 11 innings |
| 3/19/2006 | * | Texas-Arlington |
| at | Louisiana-Monroe |
| | Recap | CCD, rain (makeup of 3/18 game) |
| 3/19/2006 | * | Texas-Arlington |
| at | Louisiana-Monroe |
| | Recap | CCD, rain (makeup of 3/18 game) |
| 3/19/2006 | * | Texas-San Antonio | 4 | at | Lamar | 6 | Box Score | Recap | 11 innings |
| 3/21/2006 |
| Louisiana-Lafayette | 4 | at | Lamar | 5 | Box Score | Recap |
|
| 3/21/2006 |
| Loyola (N.O.) | 1 | at | Nicholls State | 2 | Box Score | Recap |
|
| 3/21/2006 |
| Mobile | 4 | at | Southeastern Louisiana | 7 | Box Score | Recap |
|
| 3/21/2006 |
| Sam Houston State | 5 | at | Texas A&M-Corpus Christi | 9 | Box Score | Recap |
|
| 3/21/2006 |
| Sam Houston State | 8 | at | Texas A&M-Corpus Christi | 10 | Box Score | Recap |
|
| 3/21/2006 |
| Texas-Arlington | 3 | at | Oklahoma State | 8 | Box Score | Recap |
|
| 3/21/2006 |
| Texas-Pan American | 4 | at | Texas State | 1 | Box Score | Recap |
|
| 3/22/2006 |
| Louisiana State | 5 | vs | Southeastern Louisiana | 4 | Box Score | Recap | Metairie, LA |
| 3/22/2006 |
| Southern Mississippi | 1 | at | Louisiana-Monroe | 2 | Box Score | Recap |
|
| 3/22/2006 |
| Texas-Pan American | 5 | at | Texas State | 4 | Box Score | Recap |
|
| 3/24/2006 | * | Louisiana-Monroe | 3 | at | Sam Houston State | 4 | Box Score | Recap | 11 innings |
| 3/24/2006 | * | Nicholls State | 4 | at | Texas-Arlington | 9 | Box Score | Recap |
|
| 3/24/2006 | * | Northwestern State | 3 | at | Texas-San Antonio | 4 | Box Score | Recap |
|
| 3/24/2006 | * | Stephen F. Austin | 1 | at | Lamar | 10 | Box Score | Recap |
|
| 3/24/2006 | * | Texas State | |