| Game Date | Conference | Road Team | Score |
| Home Team | Score | Box Score | Recap | Commentary |
| 1/28/2006 |
| Florida International | 3 | at | Miami, Florida | 17 | Box Score | Recap |
|
| 1/29/2006 |
| Miami, Florida | 5 | at | Florida International | 0 | Box Score | Recap |
|
| 2/3/2006 |
| Arkansas-Little Rock |
| at | Stephen F. Austin |
| | Recap | PPD to 2/4, field conditions |
| 2/4/2006 |
| Arkansas-Little Rock | 5 | at | Stephen F. Austin | 6 | Box Score | Recap | makeup of 2/3 game |
| 2/4/2006 |
| Arkansas-Little Rock |
| at | Stephen F. Austin |
| | Recap | suspended to 2/5, darkness (9-7 UALR, Top 8) |
| 2/4/2006 |
| UCF |
| at | Florida International |
| | Recap | PPD to 2/5, rain |
| 2/5/2006 |
| Arkansas-Little Rock | 10 | at | Stephen F. Austin | 7 | Box Score | Recap | resumption of suspended game |
| 2/5/2006 |
| Arkansas-Little Rock | 2 | at | Stephen F. Austin | 3 | Box Score | Recap | 12 innings |
| 2/5/2006 |
| Grambling State | 0 | at | South Alabama | 8 | Box Score | Recap |
|
| 2/5/2006 |
| UCF | 3 | at | Florida International | 4 | Box Score | Recap | makeup of 2/4 game |
| 2/5/2006 |
| UCF | 3 | at | Florida International | 13 | Box Score | Recap |
|
| 2/6/2006 |
| Grambling State | 1 | at | South Alabama | 25 | Box Score | Recap |
|
| 2/7/2006 |
| New Orleans | 3 | at | Nicholls State | 4 | Box Score | Recap |
|
| 2/10/2006 |
| Creighton |
| at | Arkansas-Little Rock |
| | Recap | CCD, rain |
| 2/10/2006 |
| Florida International | 0 | at | Southern California | 12 | Box Score | Recap |
|
| 2/10/2006 |
| Louisiana-Monroe |
| at | Arkansas State |
| | Recap | CCD, inclement weather |
| 2/10/2006 |
| Mississippi Valley State |
| at | Arkansas State |
| | Recap | CCD, inclement weather |
| 2/10/2006 |
| New Orleans | 3 | at | Cal State Northridge | 4 | Box Score | Recap |
|
| 2/10/2006 |
| Oklahoma State | 17 | at | South Alabama | 13 | Box Score | Recap | 10 innings (Jaguar Invitational, Mobile, AL) |
| 2/10/2006 |
| Texas A&M-Corpus Christi | 2 | at | Troy | 3 | Box Score | Recap | 17 innings |
| 2/11/2006 |
| Creighton | 11 | at | Arkansas-Little Rock | 12 | Box Score | Recap |
|
| 2/11/2006 |
| Florida International | 4 | at | Southern California | 5 | Box Score | Recap |
|
| 2/11/2006 |
| George Mason | 2 | at | South Alabama | 10 | Box Score | Recap | Jaguar Invitational, Mobile, AL |
| 2/11/2006 |
| Louisiana-Monroe |
| at | Arkansas State |
| | Recap | CCD, inclement weather |
| 2/11/2006 |
| New Orleans | 3 | at | Cal State Northridge | 11 | Box Score | Recap |
|
| 2/11/2006 |
| Texas A&M-Corpus Christi | 0 | at | Troy | 12 | Box Score | Recap |
|
| 2/11/2006 |
| Texas A&M-Corpus Christi | 3 | at | Troy | 23 | Box Score | Recap |
|
| 2/12/2006 |
| Arkansas | 8 | at | South Alabama | 7 | Box Score | Recap | Jaguar Invitational, Mobile, AL |
| 2/12/2006 |
| Creighton | 4 | at | Arkansas-Little Rock | 6 | Box Score | Recap |
|
| 2/12/2006 |
| Florida International | 4 | at | Southern California | 13 | Box Score | Recap |
|
| 2/12/2006 |
| Henderson State | 8 | at | Arkansas State | 13 | Box Score | Recap |
|
| 2/12/2006 |
| Louisiana-Monroe |
| at | Arkansas State |
| | Recap | CCD, inclement weather |
| 2/12/2006 |
| New Orleans | 15 | at | Cal State Northridge | 12 | Box Score | Recap |
|
| 2/12/2006 |
| Texas A&M-Corpus Christi | 12 | at | Troy | 8 | Box Score | Recap |
|
| 2/13/2006 |
| Alabama State | 3 | at | South Alabama | 7 | Box Score | Recap |
|
| 2/14/2006 |
| Louisiana-Monroe | 2 | at | Louisiana-Lafayette | 8 | Box Score | Recap |
|
| 2/15/2006 |
| Southeast Missouri State | 3 | at | Arkansas State | 4 | Box Score | Recap |
|
| 2/15/2006 |
| Southern Arkansas | 2 | at | Arkansas-Little Rock | 7 | Box Score | Recap |
|
| 2/16/2006 |
| Northern Iowa | 6 | at | Arkansas-Little Rock | 2 | Box Score | Recap | moved from 2/19, impending weather |
| 2/17/2006 |
| Akron | 7 | at | Arkansas State | 2 | Box Score | Recap |
|
| 2/17/2006 |
| Akron | 10 | at | Arkansas State | 12 | Box Score | Recap |
|
| 2/17/2006 |
| Central Michigan | 15 | at | Western Kentucky | 5 | Box Score | Recap |
|
| 2/17/2006 |
| Central Michigan | 20 | at | Western Kentucky | 6 | Box Score | Recap |
|
| 2/17/2006 |
| Louisiana-Lafayette |
| at | Louisiana Tech |
| | Recap | PPD to 4/5, inclement weather |
| 2/17/2006 |
| Mississippi Valley State | 0 | at | New Orleans | 19 | Box Score | Recap | Westwego, LA |
| 2/17/2006 |
| Northern Iowa | 8 | at | Arkansas-Little Rock | 1 | Box Score | Recap |
|
| 2/17/2006 |
| Stetson | 5 | at | South Alabama | 3 | Box Score | Recap | Coca-Cola Classic, Mobile, AL |
| 2/17/2006 |
| Troy | 8 | at | Samford | 9 | Box Score | Recap |
|
| 2/18/2006 |
| Akron |
| at | Arkansas State |
| | Recap | CCD, inclement weather |
| 2/18/2006 |
| Central Michigan |
| at | Western Kentucky |
| | Recap | CCD, inclement weather |
| 2/18/2006 |
| Florida A&M | 2 | at | Florida International | 10 | Box Score | Recap |
|
| 2/18/2006 |
| Florida A&M | 0 | at | Florida International | 10 | Box Score | Recap |
|
| 2/18/2006 |
| IUPU-Fort Wayne |
| at | Middle Tennessee State |
| | Recap | CCD, inclement weather |
| 2/18/2006 |
| IUPU-Fort Wayne |
| at | Middle Tennessee State |
| | Recap | CCD, inclement weather |
| 2/18/2006 |
| Louisiana-Lafayette |
| at | Louisiana Tech |
| | Recap | PPD to 4/12, inclement weather |
| 2/18/2006 |
| Mississippi Valley State | 9 | at | New Orleans | 14 | Box Score | Recap | Westwego, LA |
| 2/18/2006 |
| Northern Iowa |
| at | Arkansas-Little Rock |
| | | CCD, impending weather |
| 2/18/2006 |
| Troy |
| at | Samford |
| | Recap | PPD to 2/19, inclement weather |
| 2/18/2006 |
| Wichita State | 6 | at | South Alabama | 2 | Box Score | Recap | Coca-Cola Classic, Mobile, AL |
| 2/19/2006 |
| Central Michigan |
| at | Western Kentucky |
| | Recap | CCD, inclement weather |
| 2/19/2006 |
| Florida A&M | 4 | at | Florida International | 9 | Box Score | Recap |
|
| 2/19/2006 |
| IUPU-Fort Wayne |
| at | Middle Tennessee State |
| | Recap | CCD, inclement weather |
| 2/19/2006 |
| Louisiana-Lafayette |
| at | Louisiana Tech |
| | Recap | PPD, inclement weather |
| 2/19/2006 |
| Mississippi Valley State | 1 | at | New Orleans | 11 | Box Score | Recap | Westwego, LA |
| 2/19/2006 |
| Southern Mississippi | 3 | at | South Alabama | 6 | Box Score | Recap | Coca-Cola Classic, Mobile, AL |
| 2/19/2006 |
| Troy | 5 | at | Samford | 6 | Box Score | Recap |
|
| 2/21/2006 |
| Arkansas-Little Rock |
| at | Oklahoma State |
| | Recap | PPD to 3/7, travel problems |
| 2/21/2006 |
| McNeese State |
| at | Louisiana-Lafayette |
| | Recap | PPD to 3/1, rain |
| 2/21/2006 |
| Troy | 4 | at | Auburn | 5 | Box Score | Recap | 10 innings |
| 2/21/2006 |
| Tulane | 10 | vs | New Orleans | 2 | Box Score | Recap | Metairie, LA |
| 2/21/2006 |
| Western Kentucky | 4 | at | Belmont | 7 | Box Score | Recap |
|
| 2/22/2006 |
| Arkansas State | 11 | at | Murray State | 0 | Box Score | Recap |
|
| 2/22/2006 |
| Arkansas-Little Rock |
| at | Oklahoma State |
| | Recap | PPD to 3/8, travel problems |
| 2/24/2006 |
| Arkansas State | 7 | vs | Kentucky | 3 | Box Score | Recap | Cardinal Classic, Beaumont, TX |
| 2/24/2006 |
| Florida International | 0 | at | Alabama | 1 | Box Score | Recap | Alabama wins on 9th inning squeeze |
| 2/24/2006 |
| Fordham | 11 | at | New Orleans | 12 | Box Score | Recap | Westwego, LA (10 innings) |
| 2/24/2006 |
| Fordham | 8 | at | New Orleans | 2 | Box Score | Recap | moved from 2/26, impending weather (Westwego, LA) |
| 2/24/2006 |
| Middle Tennessee State | 6 | at | Jacksonville State | 2 | Box Score | Recap |
|
| 2/24/2006 |
| Ohio | 1 | at | Western Kentucky | 9 | Box Score | Recap |
|
| 2/24/2006 |
| Purdue | 5 | at | Louisiana-Lafayette | 1 | Box Score | Recap | Mardi Gras Ball Tournament, Lafayette, LA |
| 2/24/2006 |
| South Alabama | 6 | vs | Troy | 3 | Box Score | Recap | Wiregrass Classic, Dothan, AL |
| 2/24/2006 |
| Stephen F. Austin | 6 | at | Arkansas-Little Rock | 5 | Box Score | Recap |
|
| 2/25/2006 |
| Alabama-Birmingham |
| vs | South Alabama |
| | Recap | PPD to 2/26, rain (Wiregrass Classic, Dothan, AL) |
| 2/25/2006 |
| Arkansas State |
| vs | Kentucky |
| | Recap | CCD, rain (Cardinal Classic, Beaumont, TX) |
| 2/25/2006 |
| Florida International |
| at | Alabama |
| | Recap | PPD to 2/26, rain |
| 2/25/2006 |
| Fordham |
| at | New Orleans |
| | Recap | PPD to 2/26, rain |
| 2/25/2006 |
| Kansas State |
| at | Louisiana-Lafayette |
| | Recap | CCD, rain (Mardi Gras Ball Tournament, Lafayette, LA) |
| 2/25/2006 |
| Michigan |
| vs | Troy |
| | Recap | PPD to 2/26, rain (Wiregrass Classic, Dothan, AL) |
| 2/25/2006 |
| Michigan State | 8 | vs | Arkansas State | 9 | Box Score | Recap | Cardinal Classic, Beaumont, TX |
| 2/25/2006 |
| Middle Tennessee State |
| at | Jacksonville State |
| | Recap | PPD to 2/26, rain |
| 2/25/2006 |
| Ohio | 7 | at | Western Kentucky | 11 | Box Score | Recap |
|
| 2/25/2006 |
| Stephen F. Austin | 7 | at | Arkansas-Little Rock | 8 | Box Score | Recap |
|
| 2/26/2006 |
| Alabama-Birmingham | 7 | vs | Troy | 8 | Box Score | Recap | Wiregrass Classic, Dothan, AL |
| 2/26/2006 |
| Arkansas State | 8 | at | Lamar | 11 | Box Score | Recap | Cardinal Classic, Beaumont, TX |
| 2/26/2006 |
| Florida International | 2 | at | Alabama | 12 | Box Score | Recap | makeup of 2/25 game |
| 2/26/2006 |
| Florida International | 0 | at | Alabama | 7 | Box Score | Recap |
|
| 2/26/2006 |
| Fordham | 3 | at | New Orleans | 4 | Box Score | Recap | makeup of 2/25 game (Westwego, LA) |
| 2/26/2006 |
| Louisiana-Monroe | 8 | at | Louisiana-Lafayette | 12 | Box Score | Recap | 400th win at ULL for Tony Robichaux (Mardi Gras Ball Tournament, Lafayette, LA) |
| 2/26/2006 |
| Michigan | 4 | vs | South Alabama | 9 | Box Score | Recap | Wiregrass Classic, Dothan, AL |
| 2/26/2006 |
| Michigan | 7 | vs | Troy | 5 | Box Score | Recap | makeup of 2/25 game (Wiregrass Classic, Dothan, AL) |
| 2/26/2006 |
| Middle Tennessee State | 7 | at | Jacksonville State | 1 | Box Score | Recap | makeup of 2/25 game |
| 2/26/2006 |
| Middle Tennessee State | 3 | at | Jacksonville State | 1 | Box Score | Recap |
|
| 2/26/2006 |
| Ohio | 14 | at | Western Kentucky | 10 | Box Score | Recap |
|
| 2/26/2006 |
| South Alabama | 2 | vs | Alabama-Birmingham | 3 | Box Score | Recap | makeup of 2/25 game (Wiregrass Classic, Dothan, AL) |
| 2/26/2006 |
| Stephen F. Austin | 8 | at | Arkansas-Little Rock | 9 | Box Score | Recap |
|
| 2/28/2006 |
| Arkansas State | 14 | at | Mississippi | 9 | Box Score | Recap |
|
| 2/28/2006 |
| Louisiana-Lafayette | 10 | at | Nicholls State | 2 | Box Score | Recap |
|
| 2/28/2006 |
| Middle Tennessee State | 5 | at | Belmont | 6 | Box Score | Recap |
|
| 2/28/2006 |
| Northwestern State | 10 | at | Arkansas-Little Rock | 13 | Box Score | Recap |
|
| 2/28/2006 |
| Troy | 13 | at | Jacksonville State | 3 | Box Score | Recap |
|
| 3/1/2006 |
| McNeese State | 2 | at | Louisiana-Lafayette | 3 | Box Score | Recap |
|
| 3/1/2006 |
| Memphis | 3 | at | Arkansas-Little Rock | 5 | Box Score | Recap |
|
| 3/1/2006 |
| Southern | 17 | at | New Orleans | 8 | Box Score | Recap | Westwego, LA |
| 3/3/2006 |
| Arkansas State | 5 | at | Mississippi State | 9 | Box Score | Recap |
|
| 3/3/2006 |
| Butler | 3 | at | Western Kentucky | 9 | Box Score | Recap |
|
| 3/3/2006 |
| Evansville | 11 | at | Louisiana-Lafayette | 5 | Box Score | Recap | Louisiana-Lafayette Invitational, Lafayette, LA |
| 3/3/2006 |
| Missouri State | 6 | at | Middle Tennessee State | 1 | Box Score | Recap |
|
| 3/3/2006 |
| New Orleans | 3 | vs | Connecticut | 6 | Box Score | Recap | Lamar Classic, Beaumont, TX |
| 3/3/2006 |
| New York Tech | 4 | at | Florida International | 8 | Box Score | Recap |
|
| 3/3/2006 |
| Samford | 2 | at | South Alabama | 16 | Box Score | Recap |
|
| 3/4/2006 |
| Arkansas State | 4 | at | Mississippi State | 10 | Box Score | Recap |
|
| 3/4/2006 |
| Arkansas-Little Rock | 10 | at | Murray State | 5 | Box Score | Recap |
|
| 3/4/2006 |
| Arkansas-Little Rock | 0 | at | Murray State | 4 | Box Score | Recap |
|
| 3/4/2006 |
| Butler | 10 | at | Western Kentucky | 12 | Box Score | Recap |
|
| 3/4/2006 |
| Iona | 0 | vs | New Orleans | 10 | Box Score | Recap | Lamar Classic, Beaumont, TX |
| 3/4/2006 |
| Iowa | 9 | at | Louisiana-Lafayette | 14 | Box Score | Recap | Louisiana-Lafayette Invitational, Lafayette, LA |
| 3/4/2006 |
| Missouri State | 2 | at | Middle Tennessee State | 15 | Box Score | Recap |
|
| 3/4/2006 |
| New York Tech | 12 | at | Florida International | 13 | Box Score | Recap |
|
| 3/4/2006 |
| Samford | 3 | at | South Alabama | 7 | Box Score | Recap |
|
| 3/5/2006 |
| Arkansas State | 4 | at | Mississippi State | 5 | Box Score | Recap |
|
| 3/5/2006 |
| Arkansas-Little Rock | 9 | at | Murray State | 4 | Box Score | Recap |
|
| 3/5/2006 |
| Butler | 2 | at | Western Kentucky | 3 | Box Score | Recap |
|
| 3/5/2006 |
| Missouri State | 11 | at | Middle Tennessee State | 4 | Box Score | Recap |
|
| 3/5/2006 |
| New Orleans | 1 | at | Lamar | 2 | Box Score | Recap | Lamar Classic, Beaumont, TX (10 innings) |
| 3/5/2006 |
| New York Tech | 9 | at | Florida International | 12 | Box Score | Recap |
|
| 3/5/2006 |
| Northwestern State | 2 | at | Louisiana-Lafayette | 0 | Box Score | Recap | Louisiana-Lafayette Invitational, Lafayette, LA |
| 3/5/2006 |
| Samford | 7 | at | South Alabama | 15 | Box Score | Recap |
|
| 3/7/2006 |
| Arkansas-Little Rock | 8 | at | Oklahoma State | 14 | Box Score | Recap | makeup of 2/21 game |
| 3/7/2006 |
| Jacksonville State | 1 | at | Troy | 6 | Box Score | Recap |
|
| 3/7/2006 |
| Michigan State | 2 | at | Florida International | 3 | Box Score | Recap | 10 innings |
| 3/7/2006 |
| Middle Tennessee State | 5 | at | Memphis | 11 | Box Score | Recap |
|
| 3/7/2006 |
| Nicholls State | 0 | at | Louisiana-Lafayette | 8 | Box Score | Recap |
|
| 3/7/2006 |
| Tennessee-Martin | 3 | at | Arkansas State | 12 | Box Score | Recap |
|
| 3/7/2006 |
| Tennessee-Martin | 5 | at | Arkansas State | 4 | Box Score | Recap |
|
| 3/7/2006 |
| Western Kentucky | 7 | at | Kentucky | 6 | Box Score | Recap |
|
| 3/8/2006 |
| Alabama | 7 | at | South Alabama | 6 | Box Score | Recap |
|
| 3/8/2006 |
| Arkansas-Little Rock | 6 | at | Oklahoma State | 16 | Box Score | Recap | makeup of 2/22 game |
| 3/8/2006 |
| Kennesaw State | 1 | at | Troy | 4 | Box Score | Recap |
|
| 3/8/2006 |
| Middle Tennessee State | 3 | at | Memphis | 8 | Box Score | Recap |
|
| 3/8/2006 |
| Seton Hall | 2 | at | Florida International | 7 | Box Score | Recap |
|
| 3/9/2006 |
| Middle Tennessee State |
| at | Memphis |
| | Recap | CCD, rain |
| 3/10/2006 |
| Arkansas State | 7 | at | Missouri State | 16 | Box Score | Recap |
|
| 3/10/2006 |
| Coastal Carolina | 5 | at | South Alabama | 6 | Box Score | Recap |
|
| 3/10/2006 |
| Illinois | 14 | vs | Louisiana-Lafayette | 12 | Box Score | Recap | Baseball Express Collegiate Baseball Classic, San Antonio, TX |
| 3/10/2006 |
| Middle Tennessee State | 9 | at | Southern Illinois | 0 | Box Score | Recap |
|
| 3/10/2006 |
| Rutgers | 3 | at | Florida International | 7 | Box Score | Recap |
|
| 3/10/2006 |
| Stony Brook | 5 | at | New Orleans | 12 | Box Score | Recap |
|
| 3/10/2006 |
| Tennessee-Martin | 2 | at | Arkansas-Little Rock | 5 | Box Score | Recap |
|
| 3/10/2006 |
| Troy | 16 | at | Memphis | 9 | Box Score | Recap |
|
| 3/10/2006 |
| Western Kentucky | 10 | at | Morehead State | 5 | Box Score | Recap |
|
| 3/11/2006 |
| Arkansas State | 0 | at | Missouri State | 14 | Box Score | Recap |
|
| 3/11/2006 |
| Coastal Carolina | 2 | at | South Alabama | 10 | Box Score | Recap |
|
| 3/11/2006 |
| Georgia Southern | 8 | at | South Alabama | 9 | Box Score | Recap |
|
| 3/11/2006 |
| Louisiana-Lafayette | 7 | vs | Texas A&M | 1 | Box Score | Recap | Baseball Express Collegiate Baseball Classic, San Antonio, TX |
| 3/11/2006 |
| Middle Tennessee State | 8 | at | Southern Illinois | 9 | Box Score | Recap | 10 innings |
| 3/11/2006 |
| Rutgers | 7 | at | Florida International | 16 | Box Score | Recap |
|
| 3/11/2006 |
| Stony Brook | 5 | at | New Orleans | 12 | Box Score | Recap |
|
| 3/11/2006 |
| Tennessee-Martin | 4 | at | Arkansas-Little Rock | 5 | Box Score | Recap |
|
| 3/11/2006 |
| Tennessee-Martin | 7 | at | Arkansas-Little Rock | 12 | Box Score | Recap |
|
| 3/11/2006 |
| Troy | 21 | at | Memphis | 3 | Box Score | Recap |
|
| 3/11/2006 |
| Western Kentucky |
| at | Morehead State |
| | Recap | CCD, rain |
| 3/12/2006 |
| Arkansas State | 13 | at | Missouri State | 3 | Box Score | Recap |
|
| 3/12/2006 |
| Georgia Southern | 4 | at | South Alabama | 15 | Box Score | Recap |
|
| 3/12/2006 |
| Louisiana-Lafayette | 3 | vs | Iowa | 2 | Box Score | Recap | Baseball Express Collegiate Baseball Classic, San Antonio, TX |
| 3/12/2006 |
| Middle Tennessee State | 6 | at | Southern Illinois | 7 | Box Score | Recap |
|
| 3/12/2006 |
| Rutgers | 9 | at | Florida International | 12 | Box Score | Recap |
|
| 3/12/2006 |
| Stony Brook | 5 | at | New Orleans | 8 | Box Score | Recap |
|
| 3/12/2006 |
| Troy | 18 | at | Memphis | 11 | Box Score | Recap |
|
| 3/12/2006 |
| Western Kentucky |
| at | Morehead State |
| | | CCD, rain |
| 3/13/2006 |
| Louisiana-Lafayette | 2 | at | Texas-San Antonio | 5 | Box Score | Recap | Baseball Express Collegiate Baseball Classic, San Antonio, TX (12 innings) |
| 3/13/2006 |
| Rhode Island | 2 | at | Florida International | 11 | Box Score | Recap |
|
| 3/14/2006 |
| Georgia Southern | 10 | at | Troy | 14 | Box Score | Recap |
|
| 3/14/2006 |
| Maine | 9 | at | Florida International | 8 | Box Score | Recap |
|
| 3/14/2006 |
| Minnesota | 6 | at | New Orleans | 4 | Box Score | Recap |
|
| 3/14/2006 |
| Mississippi | 10 | at | Arkansas State | 8 | Box Score | Recap |
|
| 3/15/2006 |
| Arkansas-Little Rock | 4 | at | Arkansas-Pine Bluff | 6 | Box Score | Recap |
|
| 3/15/2006 |
| Fordham | 5 | at | Florida International | 8 | Box Score | Recap |
|
| 3/15/2006 |
| Georgia Southern | 2 | at | Troy | 6 | Box Score | Recap |
|
| 3/15/2006 |
| Louisiana-Lafayette | 4 | at | McNeese State | 5 | Box Score | Recap |
|
| 3/15/2006 |
| Middle Tennessee State | 4 | at | Austin Peay State | 8 | Box Score | Recap |
|
| 3/16/2006 |
| Tennessee-Martin | 11 | at | Middle Tennessee State | 12 | Box Score | Recap | 10 innings |
| 3/16/2006 |
| Texas-Pan American | 9 | at | Arkansas-Little Rock | 12 | Box Score | Recap |
|
| 3/17/2006 |
| Akron | 4 | at | Western Kentucky | 5 | Box Score | Recap |
|
| 3/17/2006 |
| Buffalo | 1 | at | New Orleans | 8 | Box Score | Recap |
|
| 3/17/2006 |
| Manhattan | 4 | at | Florida International | 19 | Box Score | Recap |
|
| 3/17/2006 |
| Middle Tennessee State | 3 | at | Birmingham-Southern | 8 | Box Score | Recap |
|
| 3/17/2006 |
| Minnesota | 0 | at | Louisiana-Lafayette | 2 | Box Score | Recap |
|
| 3/17/2006 |
| Samford | 3 | at | Arkansas State | 11 | Box Score | Recap |
|
| 3/17/2006 |
| South Alabama | 3 | at | Tulane | 6 | Box Score | Recap |
|
| 3/17/2006 |
| Texas-Pan American | 6 | at | Arkansas-Little Rock | 10 | Box Score | Recap |
|
| 3/17/2006 |
| Texas-Pan American | 0 | at | Arkansas-Little Rock | 4 | Box Score | Recap |
|
| 3/17/2006 |
| Troy | 1 | at | Southern Mississippi | 5 | Box Score | Recap |
|
| 3/18/2006 |
| Akron | 7 | at | Western Kentucky | 12 | Box Score | Recap |
|
| 3/18/2006 |
| Buffalo | 3 | at | New Orleans | 14 | Box Score | Recap |
|
| 3/18/2006 |
| Manhattan | 2 | at | Florida International | 9 | Box Score | Recap |
|
| 3/18/2006 |
| Middle Tennessee State | 6 | at | Birmingham-Southern | 9 | Box Score | Recap |
|
| 3/18/2006 |
| Minnesota | 3 | at | Louisiana-Lafayette | 2 | Box Score | Recap |
|
| 3/18/2006 |
| Samford | 10 | at | Arkansas State | 11 | Box Score | Recap | 10 innings |
| 3/18/2006 |
| South Alabama | 8 | at | Tulane | 4 | Box Score | Recap |
|
| 3/18/2006 |
| Texas-Pan American | 1 | at | Arkansas-Little Rock | 2 | Box Score | Recap | 10 innings |
| 3/18/2006 |
| Troy | 2 | at | Southern Mississippi | 3 | Box Score | Recap | 11 innings |
| 3/19/2006 |
| Buffalo | 5 | at | New Orleans | 6 | Box Score | Recap |
|
| 3/19/2006 |
| Columbia | 1 | at | Florida International | 7 | Box Score | Recap |
|
| 3/19/2006 |
| Middle Tennessee State |
| at | Birmingham-Southern |
| | Recap | CCD, rain |
| 3/19/2006 |
| Minnesota | 1 | at | Louisiana-Lafayette | 3 | Box Score | Recap |
|
| 3/19/2006 |
| Samford | 13 | at | Arkansas State | 0 | Box Score | Recap |
|
| 3/19/2006 |
| Troy | 1 | at | Southern Mississippi | 6 | Box Score | Recap |
|
| 3/19/2006 |
| Tulane | 7 | at | South Alabama | 2 | Box Score | Recap |
|
| 3/19/2006 |
| Wisconsin-Milwaukee | 13 | at | Western Kentucky | 14 | Box Score | Recap |
|
| 3/21/2006 |
| Louisiana-Lafayette | 4 | at | Lamar | 5 | Box Score | Recap |
|
| 3/21/2006 |
| Louisville |
| at | Western Kentucky |
| | Recap | PPD to 5/2, inclement weather |
| 3/21/2006 |
| New Orleans | 3 | at | Tulane | 4 | Box Score | Recap |
|
| 3/21/2006 |
| South Alabama | 4 | at | Southern Mississippi | 7 | Box Score | Recap |
|
| 3/22/2006 |
| Arkansas-Little Rock |
| at | Arkansas-Pine Bluff |
| | Recap | PPD (UAPB petitioning for forfeit) |
| 3/22/2006 |
| Memphis | 3 | at | Arkansas State | 5 | Box Score | Recap |
|
| 3/22/2006 |
| Middle Tennessee State | 6 | at | Tennessee Tech | 1 | Box Score | Recap |
|
| 3/22/2006 |
| Morehead State | 10 | at | Western Kentucky | 3 | Box Score | Recap |
|
| 3/22/2006 |
| Troy | 8 | at | Alabama | 5 | Box Score | Recap |
|
| 3/24/2006 | * | Arkansas-Little Rock | 4 | at | Middle Tennessee State | 11 | Box Score | Recap |
|
| 3/24/2006 | * | Florida International | 8 | at | Arkansas State | 4 | Box Score | Recap |
|
| 3/24/2006 | * | Louisiana-Lafayette | 7 | at | South Alabama | 8 | Box Score | Recap |
|
| 3/24/2006 |
| Mississippi Valley State | 3 | at | Troy | 18 | Box Score | Recap |
|
| 3/24/2006 | * | New Orleans | 14 | at | Western Kentucky | 5 | Box Score | Recap |
|
| 3/25/2006 | * | Arkansas-Little Rock | 5 | at | Middle Tennessee State | 2 | Box Score | Recap |
|
| 3/25/2006 | * | Florida International | 11 | at | Arkansas State | 6 | Box Score | Recap |
|
| 3/25/2006 | * | Louisiana-Lafayette | 9 | at | South Alabama | 6 | Box Score | Recap |
|
| 3/25/2006 |
| Mississippi Valley State | 3 | vs | Troy | 15 | Box Score | Recap | Ozark, AL |
| 3/25/2006 | * | New Orleans | 16 | at | Western Kentucky | 0 | Box Score | Recap |
|
| 3/26/2006 | * | Arkansas-Little Rock | 7 | at | Middle Tennessee State | 8 | Box Score | Recap |
|
| 3/26/2006 | * | Florida International | 4 | at | Arkansas State | 7 | Box Score | Recap |
|
| 3/26/2006 | * | Louisiana-Lafayette | 0 | at | South Alabama | 2 | Box Score | Recap |
|
| 3/26/2006 |
| Mississippi Valley State | 6 | at | Troy | 8 | Box Score | Recap |
|
| 3/26/2006 | * | New Orleans | 3 | at | Western Kentucky | 13 | Box Score | Recap |
|
| 3/28/2006 |
| Auburn | 7 | at | Troy | 12 | Box Score | Recap |
|
| 3/28/2006 |
| Louisiana State | 6 | at | New Orleans | 5 | Box Score | Recap | 11 innings |
| 3/28/2006 |
| Louisiana-Lafayette | 9 | at | Southeastern Louisiana | 5 | Box Score | Recap |
|
| 3/28/2006 |
| Mississippi Valley State | 3 | at | Arkansas-Little Rock | 8 | Box Score | Recap |
|
| 3/28/2006 |
| Samford | 4 | at | Middle Tennessee State | 13 | Box Score | Recap |
|
| 3/28/2006 |
| Vanderbilt | 4 | at | Western Kentucky | 6 | Box Score | Recap |
|
| 3/29/2006 |
| Harvard | 1 | at | Florida International | 10 | Box Score | Recap |
|
| 3/29/2006 |
| Northwestern State | 7 | at | Louisiana-Lafayette | 5 | Box Score | Recap |
|
| 3/29/2006 |
| Samford | 1 | at | Middle Tennessee State | 12 | Box Score | Recap |
|
| 3/29/2006 |
| South Alabama | 4 | at | Nicholls State | 1 | Box Score | Recap |
|
| 3/31/2006 | * | Arkansas State | 1 | at | Louisiana-Lafayette | 10 | Box Score | Recap |
|
| 3/31/2006 | * | New Orleans | 4 | at | Florida International | 10 | Box Score | Recap |
|
| 3/31/2006 | * | South Alabama | 4 | at | Troy | 5 | Box Score | Recap | 10 innings |
| 3/31/2006 | * | Western Kentucky | 5 | at | Arkansas-Little Rock | 4 | Box Score | Recap |
|
| 4/1/2006 | * | Arkansas State | 4 | at | Louisiana-Lafayette | 8 | Box Score | |