| Game Date |
| Opponent | Conference Game | Result | Commentary |
| 2/24/2006 | at | Mississippi |
| L 9-2 |
|
| 2/25/2006 | at | Mississippi |
| L 7-5 |
|
| 2/26/2006 | at | Mississippi |
| L 13-2 |
|
| 3/5/2006 | vs | Seton Hall |
| L 14-9 | Palm Beach, FL |
| 3/6/2006 | vs | St. Bonaventure |
| W 7-1 | Palm Beach, FL |
| 3/7/2006 | vs | St. Bonaventure |
| W 14-10 | Palm Beach, FL |
| 3/8/2006 | vs | Monmouth |
| L 6-3 | Boca Raton, FL (10 innings) |
| 3/9/2006 | vs | Pennsylvania |
| W 10-5 | Palm Beach, FL |
| 3/10/2006 | vs | Pennsylvania |
| W 14-2 | Palm Beach, FL |
| 3/11/2006 | vs | Pennsylvania |
| L 15-12 | Palm Beach, FL |
| 3/13/2006 | vs | Long Island |
| W 16-5 | Papa John Baseball Classic, West Palm Beach, FL |
| 3/14/2006 | at | Florida International |
| W 9-8 |
|
| 3/15/2006 | vs | Long Island |
| W 10-6 | Papa John Baseball Classic, West Palm Beach, FL |
| 3/16/2006 | vs | Iona |
| W 8-6 | Palm Beach, FL |
| 3/17/2006 | vs | Columbia |
| L 7-6 | Boca Raton, FL |
| 3/17/2006 | vs | Columbia |
| W 16-6 | Boca Raton, FL |
| 3/18/2006 | vs | Columbia |
| L 10-7 | Boca Raton, FL |
| 3/25/2006 | at | New York Tech |
| W 3-1 |
|
| 3/25/2006 | at | New York Tech |
| L 7-1 |
|
| 3/26/2006 | at | New York Tech |
| W 3-2 |
|
| 4/1/2006 | at | Maryland-Eastern Shore |
| W 26-15 |
|
| 4/1/2006 | at | Maryland-Eastern Shore |
| W 11-3 |
|
| 4/2/2006 | at | Delaware State |
| W 12-5 |
|
| 4/2/2006 | at | Delaware State |
| T 3-3 | 8 innings (darkness) |
| 4/5/2006 | at | Massachusetts |
|
| CCD, inclement weather |
| 4/7/2006 | at | Maryland-Baltimore County | * | W 9-4 |
|
| 4/8/2006 | at | Maryland-Baltimore County | * |
| PPD to 4/9, rain |
| 4/8/2006 | at | Maryland-Baltimore County | * |
| CCD, rain |
| 4/9/2006 | at | Maryland-Baltimore County | * | W 16-7 | makeup of 4/8 game |
| 4/9/2006 | at | Maryland-Baltimore County | * | W 6-4 | 10 innings |
| 4/13/2006 |
| Stony Brook | * | L 3-1 | 8 innings (fog) |
| 4/14/2006 |
| Stony Brook | * | W 3-2 |
|
| 4/14/2006 |
| Stony Brook | * | W 3-2 |
|
| 4/15/2006 |
| Stony Brook | * |
| CCD, rain |
| 4/18/2006 |
| Thomas |
| W 13-1 |
|
| 4/21/2006 |
| New York Tech |
| W 16-2 |
|
| 4/22/2006 |
| New York Tech |
| L 13-5 |
|
| 4/23/2006 |
| New York Tech |
| W 13-12 |
|
| 4/25/2006 |
| Colby |
| W 11-4 |
|
| 4/26/2006 |
| Holy Cross |
| W 4-3 |
|
| 4/28/2006 | at | Binghamton | * | W 4-0 |
|
| 4/29/2006 | at | Binghamton | * | W 3-1 |
|
| 4/29/2006 | at | Binghamton | * | L 4-1 |
|
| 4/30/2006 | at | Binghamton | * | L 5-0 |
|
| 5/3/2006 |
| Brown |
|
| CCD, rain (Sanford, ME) |
| 5/3/2006 |
| Brown |
|
| CCD, rain (Sanford, ME) |
| 5/5/2006 |
| Albany | * | L 10-3 |
|
| 5/6/2006 |
| Albany | * | L 7-6 |
|
| 5/6/2006 |
| Albany | * | W 10-3 |
|
| 5/7/2006 |
| Albany | * | L 7-4 |
|
| 5/13/2006 |
| Hartford | * | W 20-4 |
|
| 5/14/2006 |
| Hartford | * | L 11-5 |
|
| 5/14/2006 |
| Hartford | * | W 8-6 |
|
| 5/15/2006 |
| Hartford | * | W 11-3 |
|
| 5/16/2006 | at | Northeastern |
| L 3-2 | 5 innings (rain) |
| 5/18/2006 | at | Vermont | * | L 7-6 |
|
| 5/18/2006 | at | Vermont | * | L 11-5 |
|
| 5/19/2006 | at | Vermont | * |
| PPD to 5/20, rain |
| 5/19/2006 | at | Vermont | * |
| PPD to 5/20, rain |
| 5/20/2006 | at | Vermont | * | W 4-1 | 5 innings, rain (makeup of 5/19 game) |
| 5/20/2006 | at | Vermont | * |
| PPD to 5/21, rain (makeup of 5/19 game) |
| 5/21/2006 | at | Vermont | * | W 11-3 | makeup of 5/20 game |
| 5/25/2006 | vs | Stony Brook | AMEAST-01 | W 11-8 | America East Tournament, Game 1, Burlington, VT |
| 5/26/2006 | at | Vermont | AMEAST-04 | W 5-2 | America East Tournament, Game 4, Burlington, VT |
| 5/27/2006 | vs | Stony Brook | AMEAST-06 | W 5-3 | America East Tournament, Game 6, Burlington, VT |
| 6/2/2006 | vs | North Carolina |
| L 15-7 | Chapel Hill Regional, Game 2 |
| 6/3/2006 | vs | North Carolina-Wilmington |
| L 21-19 | Chapel Hill Regional, Game 3 |