| Game Date |
| Opponent | Conference Game | Result | Commentary |
| 2/3/2006 |
| Eastern Michigan |
| L 9-6 | 13 innings |
| 2/3/2006 |
| Eastern Michigan |
| W 8-7 |
|
| 2/4/2006 |
| Eastern Michigan |
|
| CCD, rain |
| 2/9/2006 | vs | Missouri |
| W 3-2 | Buccaneer Baseball Classic, Charleston, SC |
| 2/10/2006 | vs | Washington State |
| L 8-2 | Buccaneer Baseball Classic, Charleston, SC |
| 2/11/2006 | at | Charleston Southern |
|
| CCD, rain (Buccaneer Baseball Classic, Charleston, SC) |
| 2/16/2006 |
| Xavier |
| W 10-7 | moved from 2/18, impending weather |
| 2/16/2006 |
| Xavier |
| L 10-5 | moved from 2/19, impending weather |
| 2/17/2006 |
| Xavier |
| W 9-4 |
|
| 2/21/2006 | at | Georgia Tech |
| L 7-3 |
|
| 2/21/2006 | at | Georgia Tech |
| L 5-2 | moved from 2/22, impending weather |
| 2/24/2006 |
| Youngstown State |
| W 10-5 |
|
| 2/24/2006 |
| Youngstown State |
| W 4-2 |
|
| 2/25/2006 |
| Youngstown State |
| W 13-11 |
|
| 3/3/2006 |
| St. John's |
| L 15-1 |
|
| 3/4/2006 |
| St. John's |
| W 5-3 |
|
| 3/5/2006 |
| St. John's |
| L 14-9 |
|
| 3/8/2006 |
| Tennessee Tech |
| W 9-7 |
|
| 3/10/2006 | at | Lipscomb | * | W 8-6 |
|
| 3/11/2006 | at | Lipscomb | * | W 14-3 |
|
| 3/12/2006 | at | Lipscomb | * | L 8-3 |
|
| 3/13/2006 |
| Siena |
| W 19-6 | 6 innings (rain) |
| 3/18/2006 |
| North Florida | * | W 8-7 |
|
| 3/18/2006 |
| North Florida | * | W 7-4 |
|
| 3/19/2006 |
| North Florida | * | L 18-2 |
|
| 3/22/2006 |
| Appalachian State |
|
| PPD, field conditions |
| 3/24/2006 | at | Campbell | * | W 3-2 |
|
| 3/24/2006 | at | Campbell | * | W 7-1 |
|
| 3/25/2006 | at | Campbell | * | L 9-4 |
|
| 3/29/2006 | at | Tennessee |
| W 9-8 |
|
| 3/31/2006 |
| Belmont | * |
| PPD to 4/1, rain |
| 4/1/2006 |
| Belmont | * | L 16-9 | makeup of 3/31 game |
| 4/1/2006 |
| Belmont | * | L 11-7 |
|
| 4/2/2006 |
| Belmont | * | L 15-14 |
|
| 4/5/2006 |
| Tennessee |
| W 8-7 | 11 innings |
| 4/7/2006 | at | Kennesaw State | * | W 9-5 |
|
| 4/8/2006 | at | Kennesaw State | * | W 5-4 |
|
| 4/8/2006 | at | Kennesaw State | * | L 6-0 |
|
| 4/11/2006 |
| North Carolina-Asheville |
| W 8-6 |
|
| 4/14/2006 |
| Mercer | * | L 10-8 |
|
| 4/15/2006 |
| Mercer | * | L 6-4 | 10 innings |
| 4/15/2006 |
| Mercer | * | L 10-7 |
|
| 4/18/2006 | at | Western Carolina |
| L 7-1 |
|
| 4/21/2006 | at | Jacksonville | * | L 6-5 |
|
| 4/22/2006 | at | Jacksonville | * | L 9-7 |
|
| 4/23/2006 | at | Jacksonville | * | W 8-7 |
|
| 4/25/2006 | vs | Virginia Tech |
|
| CCD, rain (Kingsport, TN) |
| 4/26/2006 | at | Appalachian State |
|
| PPD to 4/30, rain |
| 4/30/2006 | at | Appalachian State |
| L 5-4 | makeup of 4/26 game |
| 5/2/2006 | at | North Carolina-Asheville |
| W 14-7 |
|
| 5/5/2006 |
| Stetson | * | W 11-10 |
|
| 5/6/2006 |
| Stetson | * | W 8-6 |
|
| 5/7/2006 |
| Stetson | * | W 7-6 | 11 innings |
| 5/10/2006 | at | Tennessee Tech |
|
| CCD, rain |
| 5/12/2006 |
| Gardner-Webb | * | W 5-4 |
|
| 5/13/2006 |
| Gardner-Webb | * | L 17-14 | 10 innings |
| 5/13/2006 |
| Gardner-Webb | * | W 9-4 |
|
| 5/16/2006 |
| Western Carolina |
| W 16-8 |
|
| 5/18/2006 | at | Florida Atlantic | * | L 7-2 |
|
| 5/19/2006 | at | Florida Atlantic | * | L 8-6 |
|
| 5/20/2006 | at | Florida Atlantic | * | L 7-3 |
|
| 5/24/2006 | vs | Mercer | ATLSUN-02 | L 11-3 | Atlantic Sun Tournament, Game 2, DeLand, FL |
| 5/25/2006 | vs | Campbell | ATLSUN-04 | W 11-10 | Atlantic Sun Tournament, Game 4, DeLand, FL |
| 5/26/2006 | vs | Florida Atlantic | ATLSUN-08 | W 5-1 | Atlantic Sun Tournament, Game 8, DeLand, FL |
| 5/27/2006 | at | Stetson | ATLSUN-10 | L 6-2 | Atlantic Sun Tournament, Game 10, DeLand, FL |