| Game Date |
| Opponent | Conference Game | Result | Commentary |
| 2/3/2006 | at | Texas-Pan American |
| L 2-1 | UTPA Classic, Edinburg, TX |
| 2/4/2006 | vs | Lamar |
| W 11-7 | UTPA Classic, Edinburg, TX |
| 2/5/2006 | vs | Gonzaga |
| L 12-5 | UTPA Classic, Edinburg, TX |
| 2/8/2006 | at | Air Force |
| W 13-5 | Pueblo, CO |
| 2/17/2006 | at | Texas A&M |
| L 6-3 |
|
| 2/17/2006 | at | Texas A&M |
| L 5-0 |
|
| 2/18/2006 | at | Texas A&M |
|
| PPD to 2/19, inclement weather |
| 2/19/2006 | at | Texas A&M |
| L 2-0 | makeup of 2/18 game |
| 2/21/2006 |
| Air Force |
|
| PPD, field conditions |
| 2/24/2006 | at | New Mexico State |
| W 9-6 |
|
| 2/25/2006 | at | New Mexico State |
| L 11-7 |
|
| 2/26/2006 | at | New Mexico State |
| L 17-11 |
|
| 3/3/2006 | at | New Mexico |
| L 9-4 |
|
| 3/4/2006 | at | New Mexico |
| L 21-1 |
|
| 3/5/2006 | at | New Mexico |
| L 19-6 |
|
| 3/7/2006 | at | Air Force |
| W 7-3 |
|
| 3/10/2006 | at | Cal State Sacramento |
| W 12-3 |
|
| 3/11/2006 | at | Cal State Sacramento |
| L 5-2 |
|
| 3/12/2006 | at | Cal State Sacramento |
| L 6-0 |
|
| 3/14/2006 |
| Nebraska-Kearney |
| W 10-9 | 11 innings |
| 3/15/2006 |
| Nebraska-Kearney |
| W 22-6 |
|
| 3/17/2006 | at | Creighton |
| L 2-0 |
|
| 3/18/2006 | at | Creighton |
| L 6-1 |
|
| 3/23/2006 | at | Brigham Young |
| L 4-3 |
|
| 3/24/2006 | at | Brigham Young |
| L 3-2 | 10 innings |
| 3/25/2006 | at | Brigham Young |
| W 11-7 |
|
| 3/28/2006 | at | Nebraska |
| W 5-2 |
|
| 3/29/2006 | at | Nebraska |
| L 9-1 |
|
| 4/4/2006 |
| Air Force |
| L 3-1 |
|
| 4/7/2006 |
| South Dakota State |
|
| PPD to 4/8, snow |
| 4/8/2006 |
| South Dakota State |
| L 10-8 |
|
| 4/8/2006 |
| South Dakota State |
| W 9-7 | makeup of 4/7 game |
| 4/9/2006 |
| South Dakota State |
| W 24-8 |
|
| 4/11/2006 | at | Air Force |
| W 15-5 |
|
| 4/14/2006 | at | Utah Valley State |
| L 15-10 |
|
| 4/15/2006 | at | Utah Valley State |
| L 8-2 |
|
| 4/15/2006 | at | Utah Valley State |
| W 14-11 |
|
| 4/18/2006 | at | Arkansas |
| L 2-1 |
|
| 4/19/2006 | at | Arkansas |
| W 4-2 |
|
| 4/21/2006 |
| Washington State |
| L 22-7 |
|
| 4/22/2006 |
| Washington State |
| L 10-7 |
|
| 4/23/2006 |
| Washington State |
| L 5-2 |
|
| 4/25/2006 |
| Brigham Young |
| L 7-6 |
|
| 4/26/2006 |
| Brigham Young |
| L 8-4 |
|
| 5/2/2006 |
| Air Force |
| W 20-4 |
|
| 5/9/2006 | at | Wichita State |
| L 1-0 |
|
| 5/10/2006 | at | Wichita State |
| L 5-4 | 14 innings |
| 5/12/2006 | vs | Bradley |
| L 14-2 | Jayhawk Classic, Lawrence, KS |
| 5/13/2006 | at | Kansas |
| W 8-7 | Jayhawk Classic, Lawrence, KS |
| 5/14/2006 | at | Kansas |
| W 7-4 | Jayhawk Classic, Lawrence, KS |
| 5/18/2006 | vs | North Dakota State |
| W 10-2 | Independent Invitational, Sioux Falls, SD |
| 5/19/2006 | vs | IUPU-Fort Wayne |
| W 14-11 | 10 innings (Independent Invitational, Sioux Falls, SD) |
| 5/20/2006 | vs | New York Tech |
| W 13-10 | Independent Invitational, Sioux Falls, SD |
| 5/21/2006 | vs | North Dakota State |
| W 6-1 | Independent Invitational, Sioux Falls, SD |