| Game Date |
| Opponent | Conference Game | Result | Commentary |
| 3/4/2006 | at | Bucknell |
| W 6-4 |
|
| 3/4/2006 | at | Bucknell |
| L 10-4 |
|
| 3/5/2006 | at | Bucknell |
| L 3-1 |
|
| 3/5/2006 | at | Bucknell |
| L 9-6 |
|
| 3/10/2006 | at | Villanova |
| L 7-5 | Villanova Baseball Classic, Plymouth Meeting, PA |
| 3/11/2006 | at | LaSalle |
| W 6-1 | Villanova Baseball Classic, Philadelphia, PA |
| 3/12/2006 | at | Villanova |
|
| CCD, rain (Villanova Baseball Classic, Plymouth Meeting, PA) |
| 3/18/2006 | vs | Eastern Kentucky |
| W 8-7 | Bradenton, FL (12 innings) |
| 3/18/2006 | vs | Bradley |
| L 24-2 | Florida All-Star Baseball Challenge, Bradenton, FL |
| 3/19/2006 | vs | Vermont |
| W 12-6 | Bradenton, FL |
| 3/20/2006 | vs | Ohio State |
| L 12-4 | Bradenton, FL |
| 3/21/2006 | vs | Ohio State |
| L 6-0 | Bradenton, FL |
| 3/23/2006 | vs | Illinois |
| L 6-4 | Bradenton, FL (10 innings) |
| 3/24/2006 | vs | Illinois |
| L 19-12 | Bradenton, FL |
| 4/1/2006 |
| Dartmouth | * | W 2-1 |
|
| 4/1/2006 |
| Dartmouth | * | L 16-6 |
|
| 4/2/2006 |
| Harvard | * | L 14-3 |
|
| 4/2/2006 |
| Harvard | * | L 12-6 |
|
| 4/5/2006 | at | Binghamton |
| L 8-3 |
|
| 4/8/2006 | at | Yale | * |
| PPD to 4/10, rain |
| 4/8/2006 | at | Yale | * |
| PPD to 4/10, rain |
| 4/9/2006 | at | Yale | * | L 7-0 |
|
| 4/9/2006 | at | Yale | * | L 5-4 | 10 innings |
| 4/10/2006 | at | Brown | * | L 9-2 | makeup of 4/8 game |
| 4/10/2006 | at | Brown | * | L 5-4 | makeup of 4/8 game (10 innings) |
| 4/11/2006 |
| LeMoyne |
| L 2-0 |
|
| 4/11/2006 |
| LeMoyne |
| L 19-5 |
|
| 4/15/2006 | at | Pennsylvania | * | W 10-1 |
|
| 4/15/2006 | at | Pennsylvania | * | W 23-10 |
|
| 4/16/2006 | at | Pennsylvania | * | L 11-6 |
|
| 4/16/2006 | at | Pennsylvania | * | W 17-3 |
|
| 4/19/2006 | at | LeMoyne |
| L 15-3 |
|
| 4/19/2006 | at | LeMoyne |
| L 6-4 |
|
| 4/22/2006 |
| Columbia | * |
| PPD to 4/24, rain |
| 4/22/2006 |
| Columbia | * |
| PPD to 4/24, rain |
| 4/23/2006 |
| Columbia | * | L 7-3 |
|
| 4/23/2006 |
| Columbia | * | W 10-6 |
|
| 4/24/2006 |
| Columbia | * | L 10-4 | makeup of 4/22 game |
| 4/24/2006 |
| Columbia | * | W 11-2 | makeup of 4/22 game |
| 4/25/2006 |
| Siena |
| L 14-3 |
|
| 4/28/2006 |
| Princeton | * | L 3-0 |
|
| 4/28/2006 |
| Princeton | * | L 12-8 |
|
| 4/30/2006 | at | Princeton | * | L 4-3 |
|
| 4/30/2006 | at | Princeton | * | L 12-2 |
|