| Game Date |
| Opponent | Conference Game | Result | Commentary |
| 2/24/2006 |
| Toledo |
| L 4-3 |
|
| 2/25/2006 |
| Toledo |
| L 5-3 |
|
| 2/26/2006 |
| Toledo |
|
| CCD, inclement weather |
| 2/28/2006 |
| Oakland |
| W 12-2 |
|
| 3/1/2006 |
| Oakland |
| W 21-9 |
|
| 3/3/2006 |
| Akron |
| L 7-1 |
|
| 3/4/2006 |
| Akron |
| W 9-1 |
|
| 3/5/2006 |
| Akron |
| W 7-4 |
|
| 3/7/2006 |
| Louisville |
| L 20-3 |
|
| 3/8/2006 |
| Bellarmine |
| W 18-14 |
|
| 3/11/2006 | vs | Connecticut |
| L 5-4 | Florida All-Star Baseball Challenge, Bradenton, FL |
| 3/12/2006 | vs | St. Francis |
| W 13-2 | Florida All-Star Baseball Challenge, Bradenton, FL |
| 3/13/2006 | vs | Bradley |
| L 3-2 | Bradenton, FL (12 innings) |
| 3/14/2006 | vs | Fairfield |
| L 6-4 | Bradenton, FL |
| 3/16/2006 | vs | Indiana |
| W 7-6 | Bradenton, FL |
| 3/17/2006 | vs | Northern Iowa |
| W 8-5 | Bradenton, FL |
| 3/17/2006 | vs | Northern Iowa |
| W 13-9 | Bradenton, FL |
| 3/18/2006 | vs | Cornell |
| L 8-7 | Bradenton, FL (12 innings) |
| 3/22/2006 |
| Georgetown (KY) |
| W 3-2 |
|
| 3/25/2006 | at | Morehead State | * |
| PPD to 3/26, inclement weather |
| 3/25/2006 | at | Morehead State | * |
| CCD, inclement weather |
| 3/26/2006 | at | Morehead State | * | L 12-2 | makeup of 3/25 game |
| 3/26/2006 | at | Morehead State | * | W 1-0 | No-hitter for Chris Friedrich (EKU) |
| 3/29/2006 | at | Louisville |
| L 14-4 |
|
| 4/1/2006 |
| Tennessee Tech | * | W 22-4 |
|
| 4/1/2006 |
| Tennessee Tech | * | W 5-0 |
|
| 4/2/2006 |
| Tennessee Tech | * | L 4-2 | 10 innings |
| 4/5/2006 | at | Western Kentucky |
| L 9-5 |
|
| 4/8/2006 | at | Tennessee-Martin | * | W 4-2 |
|
| 4/8/2006 | at | Tennessee-Martin | * | W 6-1 |
|
| 4/9/2006 | at | Tennessee-Martin | * | W 11-3 |
|
| 4/12/2006 |
| Miami, Ohio |
| W 6-5 |
|
| 4/14/2006 |
| Murray State | * | L 13-9 |
|
| 4/14/2006 |
| Murray State | * | L 13-2 |
|
| 4/15/2006 |
| Murray State | * | W 16-13 |
|
| 4/18/2006 | at | Miami, Ohio |
| L 7-6 |
|
| 4/22/2006 | at | Jacksonville State | * | L 4-2 |
|
| 4/22/2006 | at | Jacksonville State | * | W 7-4 | 10 innings |
| 4/23/2006 | at | Jacksonville State | * | L 10-5 |
|
| 4/25/2006 |
| Kentucky State |
|
| CCD, rain |
| 4/25/2006 |
| Kentucky State |
|
| CCD, rain |
| 4/26/2006 | at | Marshall |
| L 6-3 |
|
| 4/29/2006 |
| Samford | * | L 10-3 |
|
| 4/30/2006 |
| Samford | * | W 2-1 | moved from 4/29, impending weather |
| 4/30/2006 |
| Samford | * | W 7-6 |
|
| 5/3/2006 |
| Marshall |
| L 14-12 |
|
| 5/6/2006 | at | Southeast Missouri State | * | L 11-2 |
|
| 5/6/2006 | at | Southeast Missouri State | * |
| PPD to 5/7, rain |
| 5/7/2006 | at | Southeast Missouri State | * | W 8-3 | makeup of 5/6 game |
| 5/7/2006 | at | Southeast Missouri State | * | W 6-5 |
|
| 5/13/2006 |
| Eastern Illinois | * | L 11-4 |
|
| 5/13/2006 |
| Eastern Illinois | * | W 2-1 |
|
| 5/14/2006 |
| Eastern Illinois | * | W 8-6 |
|
| 5/16/2006 |
| Western Kentucky |
| L 14-4 |
|
| 5/19/2006 |
| Austin Peay State | * | W 12-6 |
|
| 5/19/2006 |
| Austin Peay State | * | L 5-0 |
|
| 5/20/2006 |
| Austin Peay State | * | W 6-4 |
|
| 5/24/2006 | vs | Austin Peay State | OVC-01 | W 6-3 | OVC Tournament, Game 1, Paducah, KY |
| 5/25/2006 | vs | Jacksonville State | OVC-04 | L 19-7 | OVC Tournament, Game 4, Paducah, KY |
| 5/26/2006 | vs | Southeast Missouri State | OVC-07 | W 14-10 | OVC Tournament, Game 7, Paducah, KY |
| 5/27/2006 | vs | Samford | OVC-09 | L 24-6 | OVC Tournament, Game 9, Paducah, KY |