| Game Date |
| Opponent | Conference Game | Result | Commentary |
| 2/17/2006 |
| North Carolina-Greensboro |
| W 7-6 | 11 innings |
| 2/18/2006 |
| North Carolina-Greensboro |
| W 9-8 |
|
| 2/19/2006 |
| North Carolina-Greensboro |
| W 7-3 |
|
| 2/22/2006 | at | Georgia State |
|
| PPD, rain |
| 2/24/2006 |
| San Diego |
| W 1-0 |
|
| 2/25/2006 |
| San Diego |
|
| PPD to 2/26, rain |
| 2/26/2006 |
| San Diego |
| W 3-1 | makeup of 2/25 game |
| 2/26/2006 |
| San Diego |
| W 9-8 |
|
| 3/2/2006 | at | Southern California |
| W 3-2 |
|
| 3/3/2006 | at | Southern California |
| L 9-5 |
|
| 3/4/2006 | at | Southern California |
| L 12-11 |
|
| 3/7/2006 |
| Wofford |
| W 11-8 |
|
| 3/10/2006 |
| Louisville |
| W 8-1 |
|
| 3/11/2006 |
| Louisville |
| W 13-5 |
|
| 3/12/2006 |
| Louisville |
| W 11-0 |
|
| 3/14/2006 |
| Kennesaw State |
| W 11-3 |
|
| 3/15/2006 |
| Western Carolina |
| W 11-0 |
|
| 3/17/2006 |
| Alabama | * | L 4-1 |
|
| 3/18/2006 |
| Alabama | * | L 5-3 |
|
| 3/19/2006 |
| Alabama | * | W 6-4 |
|
| 3/22/2006 | vs | Georgia State |
| W 14-7 | Marietta, GA |
| 3/24/2006 | at | Arkansas | * | W 2-0 |
|
| 3/25/2006 | at | Arkansas | * | W 8-7 |
|
| 3/26/2006 | at | Arkansas | * | L 5-4 | 10 innings |
| 3/28/2006 |
| Clemson |
| W 12-11 | 10 innings |
| 3/29/2006 | at | Clemson |
| L 10-7 |
|
| 3/31/2006 |
| Mississippi | * | L 6-4 |
|
| 4/1/2006 |
| Mississippi | * | L 11-10 |
|
| 4/2/2006 |
| Mississippi | * | L 11-4 |
|
| 4/4/2006 |
| Gardner-Webb |
| W 9-4 |
|
| 4/7/2006 | at | Mississippi State | * | L 15-5 | 1,300th victory for Ron Polk (MSU) |
| 4/8/2006 | at | Mississippi State | * | W 6-1 |
|
| 4/9/2006 | at | Mississippi State | * | W 4-2 |
|
| 4/12/2006 | at | Georgia Tech |
| L 8-2 |
|
| 4/14/2006 | at | Vanderbilt | * | W 9-7 |
|
| 4/15/2006 | at | Vanderbilt | * | L 5-4 |
|
| 4/16/2006 | at | Vanderbilt | * | L 11-3 |
|
| 4/18/2006 |
| Mercer |
| W 14-2 |
|
| 4/21/2006 |
| Tennessee | * | L 7-4 | 11 innings |
| 4/22/2006 |
| Tennessee | * | W 3-0 |
|
| 4/23/2006 |
| Tennessee | * | L 6-4 |
|
| 4/25/2006 |
| Western Carolina |
| L 7-5 |
|
| 4/26/2006 |
| Georgia Tech |
| W 12-6 |
|
| 4/28/2006 | at | Florida | * | W 7-0 |
|
| 4/29/2006 | at | Florida | * | W 9-3 |
|
| 4/30/2006 | at | Florida | * | W 9-6 |
|
| 5/5/2006 |
| South Carolina | * | W 8-4 |
|
| 5/6/2006 |
| South Carolina | * | W 7-5 |
|
| 5/7/2006 |
| South Carolina | * | W 7-4 |
|
| 5/11/2006 | vs | Georgia Tech |
| W 5-4 | 11 innings (Atlanta, GA (moved from 5/10, impending weather)) |
| 5/12/2006 | at | Auburn | * | W 10-7 |
|
| 5/13/2006 | at | Auburn | * | W 4-3 |
|
| 5/14/2006 | at | Auburn | * | W 9-4 |
|
| 5/16/2006 | vs | Kennesaw State |
| W 8-7 | Rome, GA |
| 5/18/2006 |
| Kentucky | * | W 10-9 |
|
| 5/19/2006 |
| Kentucky | * | L 8-3 |
|
| 5/20/2006 |
| Kentucky | * | W 4-0 |
|
| 5/24/2006 | vs | Vanderbilt | SEC-02 | L 9-4 | SEC Tournament, Game 2, Hoover, AL |
| 5/25/2006 | vs | Kentucky | SEC-05 | W 16-10 | SEC Tournament, Game 5, Hoover, AL |
| 5/26/2006 | vs | South Carolina | SEC-09 | W 16-10 | SEC Tournament, Game 9, Hoover, AL |
| 5/27/2006 | vs | Vanderbilt | SEC-11 | W 5-4 | SEC Tournament, Game 11, Hoover, AL |
| 5/27/2006 | vs | Vanderbilt | SEC-13 | L 11-1 | SEC Tournament, Game 13, Hoover, AL |
| 6/2/2006 | vs | Sacred Heart |
|
| PPD to 6/3, rain (Athens Regional, Game 2) |
| 6/3/2006 | vs | Sacred Heart |
| W 11-0 | Athens Regional, Game 2 |
| 6/3/2006 | vs | Florida State |
| L 6-4 | Athens Regional, Game 4 |
| 6/4/2006 | vs | Jacksonville |
| W 15-8 | Athens Regional, Game 5 |
| 6/4/2006 | vs | Florida State |
| W 7-1 | Athens Regional, Game 6 |
| 6/5/2006 | vs | Florida State |
| W 3-2 | Athens Regional, Game 7 (if necessary) |
| 6/10/2006 | vs | South Carolina |
| L 15-6 | Athens Super Regional, Game 1 |
| 6/11/2006 | vs | South Carolina |
| W 11-5 | Athens Super Regional, Game 2 |
| 6/12/2006 | vs | South Carolina |
| W 11-6 | Athens Super Regional, Game 3 (if necessary) |
| 6/17/2006 | vs | Rice |
| L 6-4 | College World Series, Game 3 |
| 6/19/2006 | vs | Oregon State |
| L 5-3 | College World Series, Game 7 |